PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ahy020269 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NF-YB | ||||||||
Protein Properties | Length: 147aa MW: 15913.4 Da PI: 4.8785 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 186.8 | 1.6e-58 | 27 | 122 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 reqdr+lPianv+rimkk+lPanakisk+aketvqecvsefisf+t+easdkcq+ekrktingddllwa++tlGfedyveplk+yl+kyre+eg+k Ahy020269 27 REQDRLLPIANVGRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKIYLHKYREMEGDK 122 89********************************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.2E-54 | 25 | 126 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 6.52E-42 | 29 | 131 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.8E-28 | 32 | 96 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.0E-21 | 60 | 78 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 63 | 79 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 2.0E-21 | 79 | 97 | No hit | No description |
PRINTS | PR00615 | 2.0E-21 | 98 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MGESDNESGG QGGNEFSSSS GGSGLCREQD RLLPIANVGR IMKKALPANA KISKEAKETV 60 QECVSEFISF ITGEASDKCQ KEKRKTINGD DLLWAMTTLG FEDYVEPLKI YLHKYREMEG 120 DKTPIVGGGR QHHSDDHAGD DAATAGX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 4e-49 | 27 | 117 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 4e-49 | 27 | 117 | 2 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016195814.1 | 1e-106 | nuclear transcription factor Y subunit B-3 | ||||
Refseq | XP_025629769.1 | 1e-106 | nuclear transcription factor Y subunit B-3 | ||||
Swissprot | O23310 | 2e-67 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | A0A445AYA3 | 1e-104 | A0A445AYA3_ARAHY; Uncharacterized protein | ||||
STRING | XP_004486346.1 | 6e-73 | (Cicer arietinum) | ||||
STRING | GLYMA09G01650.1 | 1e-72 | (Glycine max) |
Publications ? help Back to Top | |||
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