PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy019905

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 497aa MW: 55113.9 Da PI: 6.4018

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59548930	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.1	8.2e-07	259	280	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Ahy019905 259 FCTICGKGFKRDANLRMHMRGH 280 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.21E-5	256	284	No hit	No description
SMART	SM00355	0.0026	258	280	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.03	258	285	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	9.9E-6	259	305	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	260	280	IPR007087	Zinc finger, C2H2
SMART	SM00355	53	307	340	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	39	345	367	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MDRKESLCTN TWTEPSSLTN CGNGLQTNLS SDPSISDYGE RVEAPFKDFN QPSQMQSLLS 60 KNVIKIADQE NCPPSDSSQT SILQNWDASV MLNNLSFLEK KVHQLQELVC LIVSKKGQTF 120 GQPNELLTQE QQLITADLTS IIVQLISSAG SLLPSARHTL TSTSPLVQQL CQLQGITVPF 180 ASGSGQSSVQ PQNNGADKLS ESSLKNGLPN NCDLEQKYNV EEHELKDEED ADDGENLLPG 240 SYEILQLEKE EILAPHTHFC TICGKGFKRD ANLRMHMRGH GDEYKTAAAL AKPHKESESQ 300 PKLIKRYSCP YAGCKRNKDH KKFQPLKTIL CVKNHYKRTH CDKNYTCSRC HIKKFSVMAD 360 LKTHEKHCGK DKWLCSCGTT FSRKDKLFGH IALFQGHTPA IPMEDNKRTT GLPDQDNSKA 420 EVMSFSSGLN PSTENGVQNV MDVKGNIDDP ITCFSPLNFE ANFGGFNEFT QPQFDDGSEG 480 SFSFLIPGSF KSGEVSS

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MDRKESLCTN TWTEPSSLTN CGNGLQTNLS SDPSISDYGE RVEAPFKDFN QPSQMQSLLS  60
KNVIKIADQE NCPPSDSSQT SILQNWDASV MLNNLSFLEK KVHQLQELVC LIVSKKGQTF  120
GQPNELLTQE QQLITADLTS IIVQLISSAG SLLPSARHTL TSTSPLVQQL CQLQGITVPF  180
ASGSGQSSVQ PQNNGADKLS ESSLKNGLPN NCDLEQKYNV EEHELKDEED ADDGENLLPG  240
SYEILQLEKE EILAPHTHFC TICGKGFKRD ANLRMHMRGH GDEYKTAAAL AKPHKESESQ  300
PKLIKRYSCP YAGCKRNKDH KKFQPLKTIL CVKNHYKRTH CDKNYTCSRC HIKKFSVMAD  360
LKTHEKHCGK DKWLCSCGTT FSRKDKLFGH IALFQGHTPA IPMEDNKRTT GLPDQDNSKA  420
EVMSFSSGLN PSTENGVQNV MDVKGNIDDP ITCFSPLNFE ANFGGFNEFT QPQFDDGSEG  480
SFSFLIPGSF KSGEVSS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269\|PubMed:17535918, ECO:0000269\|PubMed:18826429, ECO:0000269\|PubMed:19321711, ECO:0000269\|PubMed:23935008}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269\|PubMed:17535918}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025702358.1	0.0	protein SENSITIVE TO PROTON RHIZOTOXICITY 1
Refseq	XP_025702359.1	0.0	protein SENSITIVE TO PROTON RHIZOTOXICITY 1
Swissprot	Q9C8N5	1e-172	STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBL	A0A445CY52	0.0	A0A445CY52_ARAHY; Uncharacterized protein
STRING	GLYMA10G35940.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-165	C2H2 family protein

Publications ? help Back to Top
Kobayashi Y, et al. Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions. Plant Physiol., 2013. 163(1): p. 180-92 [PMID:23839867] Yokosho K,Yamaji N,Ma JF Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench). Plant Cell Physiol., 2014. 55(12): p. 2077-91 [PMID:25273892] Geng X, et al. LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. Plant J., 2017. 90(3): p. 491-504 [PMID:28181322] Balzergue C, et al. Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation. Nat Commun, 2017. 8: p. 15300 [PMID:28504266] Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation. Front Plant Sci, 2017. 8: p. 822 [PMID:28567051] Jiang F, et al. Identification and characterization of suppressor mutants of stop1. BMC Plant Biol., 2017. 17(1): p. 128 [PMID:28738784] Daspute AA, et al. Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms. Front Plant Sci, 2017. 8: p. 1358 [PMID:28848571] Sharma A,Wai CM,Ming R,Yu Q Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. Genome Biol Evol, 2017. 9(9): p. 2170-2190 [PMID:28922793] Zhang Y, et al. The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis. Front Plant Sci, 2018. 9: p. 118 [PMID:29491872]