PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ahy019848 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 279aa MW: 32268.1 Da PI: 8.9172 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.3 | 3.2e-06 | 13 | 37 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ dC s++rk++L+rH+ H Ahy019848 13 YVCTvdDCQASYRRKDHLTRHLLQH 37 99*******************9887 PP | |||||||
2 | zf-C2H2 | 11.5 | 0.00092 | 42 | 67 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C+ Fs k n+ rH + H Ahy019848 42 FKCPmeNCNLIFSIKGNMARHVKEiH 67 89********************9988 PP | |||||||
3 | zf-C2H2 | 20.3 | 1.5e-06 | 81 | 105 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk+F+ s L++H +H Ahy019848 81 FVCPetGCGKVFKFASKLRKHADSH 105 89*******************9888 PP | |||||||
4 | zf-C2H2 | 15.2 | 6e-05 | 171 | 196 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kC+ C+ Fs+ksnL++H + H Ahy019848 171 FKCEfkGCSCKFSSKSNLVTHKKAvH 196 89*******************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-11 | 8 | 39 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.23E-7 | 8 | 39 | No hit | No description |
PROSITE profile | PS50157 | 10.097 | 13 | 42 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0024 | 13 | 37 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 15 | 37 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.82E-6 | 40 | 68 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-4 | 40 | 68 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0086 | 42 | 67 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.162 | 42 | 72 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 44 | 67 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.09E-5 | 74 | 106 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.9E-8 | 79 | 105 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.658 | 81 | 110 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0047 | 81 | 105 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 83 | 105 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.3 | 113 | 138 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 9.2E-4 | 113 | 134 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 115 | 138 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 120 | 141 | 162 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.04E-8 | 152 | 206 | No hit | No description |
SMART | SM00355 | 0.003 | 171 | 196 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.256 | 171 | 201 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.7E-6 | 171 | 198 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 173 | 196 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.2E-5 | 199 | 225 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 7.1 | 202 | 228 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 204 | 228 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MPQSRFIQDE RPYVCTVDDC QASYRRKDHL TRHLLQHEGK TFKCPMENCN LIFSIKGNMA 60 RHVKEIHDEG STSTNVESKQ FVCPETGCGK VFKFASKLRK HADSHVKLQS VDVVCLEPGC 120 MKHFTNNQCL KEHIESCHQY VTCDTCGSRQ LKKNIKRHLC THEADKSLAE FKCEFKGCSC 180 KFSSKSNLVT HKKAVHFKEK PFVCGFPDCG LRFAYKHVRD KHEKTGKHVF THGDFEEADE 240 QFRSRPRGGR KRVCPTVEML VRKRVTPPSQ LENLLFMQE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 1e-13 | 1 | 225 | 10 | 183 | Aart |
2i13_B | 1e-13 | 1 | 225 | 10 | 183 | Aart |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016184023.1 | 0.0 | transcription factor IIIA isoform X1 | ||||
Refseq | XP_016184024.1 | 0.0 | transcription factor IIIA isoform X1 | ||||
Refseq | XP_025633852.1 | 0.0 | transcription factor IIIA isoform X1 | ||||
Swissprot | Q84MZ4 | 1e-108 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A445EWZ0 | 0.0 | A0A445EWZ0_ARAHY; Uncharacterized protein | ||||
STRING | XP_007142319.1 | 1e-150 | (Phaseolus vulgaris) |