PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy019202

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

GRAS

Protein Properties

Length: 754aa MW: 84929.6 Da PI: 4.8961

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59522162	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	372.4	5.9e-114	376	751	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lL+ cA+avs+ d++ a++lL++++++++p+gd++qR a+yf+++L+arl++ ++++ + +t++ + +e l+a+k+f +++P+ kf+++ aN+ Ahy019202 376 LRTLLVLCAQAVSACDNRTATELLKQIRQHSTPSGDATQRTAHYFANGLEARLHGDGTGTQGFYTYVSTKRLSAAEFLKAYKVFMNACPFSKFANFFANK 475 5789*************************************************999999888888888888*********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 +I++a++++e++HiiDf+i +G+QWp L++ L++R+ gp +l+iTg++ p++g +e+l+etg+rLa+++e+++vpfe+n+++++++e++++e+L+++ Ahy019202 476 MIMKAAQNAETLHIIDFGILYGFQWPILIKFLSDRETGPLkKLKITGIEFPQPGfrPAERLNETGRRLANYCERFKVPFEYNAIASRNWETIQVEDLKIE 575 ********************************66544********9*************************9999********* PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 ++E laVn++ + ++l+de+ +++s+rd+vL+l+k+++P+++v + + ++n++ F++rf eal ++sa++d+ +a +pr++e+r+k+Ere++gre+ nv Ahy019202 576 SNEFLAVNCHKRFENLMDETIEVNSPRDAVLQLIKKINPDIFVQAIVNGSYNAPFFATRFREALFHFSAIYDMCDAVIPRDNEKRMKIEREIIGREVLNV 675 ************************************************************************************************ PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 vaceg+er+ r et+++W++r ++aGFk++pl+e+ +++ ++ l++ + + + +e+ +++++gWk+r L++ ++W Ahy019202 676 VACEGFERIDRPETYKQWQARNTRAGFKQLPLNEELMAKFSAKLKEWYHKDFVFDEDGNWMLQGWKGRVLYASTCW 751 ********************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.024	350	732	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.1E-111	376	751	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence Send to blast
MDPNYPIGGS DDFMNSFQIG EDGHHGTIIF SDDQNQFYYD ANQHLDPLYQ HVADQLFDEF 60 PQYTSHVEEA AAAPVASTVV DPSVEDADFS ETAKFITQVL MEEGVEQRPF YDPFSLNATE 120 QSFYDALNDV LIDNINMPLS PNEHPLDVHH QGGTTSSSSS GSNSGNNNDN QNNNNPVDEN 180 SSEFLKPSVS PDTFSSGDHA FQFNSHAISQ HDSNASYVTN FGVYDVDTSF TKLLAQNIFS 240 DSDSVSQFRR GLEEASKFLP PGPQLVTGFE TTPAVAVPID ELKGDKAVGL KGRKNHEREE 300 WSDDTEEGRS NKHSATSSVV DESELSEMFD KVLLSIGAPM CFPVNNEVEK ASNPSTSNGG 360 KGRPKRQGKK KETIDLRTLL VLCAQAVSAC DNRTATELLK QIRQHSTPSG DATQRTAHYF 420 ANGLEARLHG DGTGTQGFYT YVSTKRLSAA EFLKAYKVFM NACPFSKFAN FFANKMIMKA 480 AQNAETLHII DFGILYGFQW PILIKFLSDR ETGPLKKLKI TGIEFPQPGF RPAERLNETG 540 RRLANYCERF KVPFEYNAIA SRNWETIQVE DLKIESNEFL AVNCHKRFEN LMDETIEVNS 600 PRDAVLQLIK KINPDIFVQA IVNGSYNAPF FATRFREALF HFSAIYDMCD AVIPRDNEKR 660 MKIEREIIGR EVLNVVACEG FERIDRPETY KQWQARNTRA GFKQLPLNEE LMAKFSAKLK 720 EWYHKDFVFD EDGNWMLQGW KGRVLYASTC WVPA

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence Send to blast

MDPNYPIGGS DDFMNSFQIG EDGHHGTIIF SDDQNQFYYD ANQHLDPLYQ HVADQLFDEF  60
PQYTSHVEEA AAAPVASTVV DPSVEDADFS ETAKFITQVL MEEGVEQRPF YDPFSLNATE  120
QSFYDALNDV LIDNINMPLS PNEHPLDVHH QGGTTSSSSS GSNSGNNNDN QNNNNPVDEN  180
SSEFLKPSVS PDTFSSGDHA FQFNSHAISQ HDSNASYVTN FGVYDVDTSF TKLLAQNIFS  240
DSDSVSQFRR GLEEASKFLP PGPQLVTGFE TTPAVAVPID ELKGDKAVGL KGRKNHEREE  300
WSDDTEEGRS NKHSATSSVV DESELSEMFD KVLLSIGAPM CFPVNNEVEK ASNPSTSNGG  360
KGRPKRQGKK KETIDLRTLL VLCAQAVSAC DNRTATELLK QIRQHSTPSG DATQRTAHYF  420
ANGLEARLHG DGTGTQGFYT YVSTKRLSAA EFLKAYKVFM NACPFSKFAN FFANKMIMKA  480
AQNAETLHII DFGILYGFQW PILIKFLSDR ETGPLKKLKI TGIEFPQPGF RPAERLNETG  540
RRLANYCERF KVPFEYNAIA SRNWETIQVE DLKIESNEFL AVNCHKRFEN LMDETIEVNS  600
PRDAVLQLIK KINPDIFVQA IVNGSYNAPF FATRFREALF HFSAIYDMCD AVIPRDNEKR  660
MKIEREIIGR EVLNVVACEG FERIDRPETY KQWQARNTRA GFKQLPLNEE LMAKFSAKLK  720
EWYHKDFVFD EDGNWMLQGW KGRVLYASTC WVPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-46	380	751	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025686194.1	0.0	scarecrow-like protein 31
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A445A9V9	0.0	A0A445A9V9_ARAHY; Uncharacterized protein
STRING	XP_007132056.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]