PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy019090

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

GRAS

Protein Properties

Length: 541aa MW: 60744.6 Da PI: 6.2582

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59524571	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	456	2.4e-139	171	541	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l+++L+ cA+a++++dl +aq+l+ +l++++s +g+p+qRl ay++e+L arl++s+s++y+al+++e + s+e l+++++++ev+P++kf+++ aN Ahy019090 171 LKHVLVVCAKAIAENDLLMAQRLMDELRQMVSVSGEPIQRLGAYMLEGLVARLSSSGSSIYRALRCKEPE---SAELLSYMHILYEVCPYFKFGYMSANG 267 6899***************************************************************9...9********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 aI ea++ e+rvHiiDf+isqG QW++L+qa+a+Rp+gpp++RiTg+++++s + l+ +g+rL+k+Ae+++vpfef++ +a + d++l++L v+p Ahy019090 268 AIAEAMKDEDRVHIIDFQISQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLHIVGKRLSKLAEHFKVPFEFHA-AAISGCDVQLHNLGVRP 366 *********************************************998899999********************.88899******** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 gEalaVn++++lh+++desvs+ ++rd++L+lvkslsPkvv++veqe+++n++ F+ rfle+++yy+a+f+s++++lpre++eri+vE+++l+r++vn++ Ahy019090 367 GEALAVNFAFMLHHMPDESVSTLNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFLETMDYYTAMFESIDVTLPREHKERINVEQHCLARDLVNII 466 ************************************************************************************************ PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 aceg er+erhe l+kWr+r+ +aGF+p+pls+ ++ ++k ll +++++ yr+ee++g+l+lgW++r Lv+ +aW+ Ahy019090 467 ACEGVERVERHEVLGKWRSRFAMAGFSPYPLSSLVNGTIKKLLDNYSDR-YRLEERDGALYLGWMNRDLVASCAWK 541 *******************************************66.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	70.028	145	522	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.2E-137	171	541	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MQASEHHRSS SMYYQPMQQV EAYCMPQYQA LNHHQYYNDG GHGIGSRFSN QSSSEIYCTL 60 ESSSATGSFN VYNSPSTVSF SPNGSPVSLQ DSQSQSYPPD NNYGSPMSGS CITDDLSTFK 120 HKLRELESVM FGPDCDNLDS YDSSFKDATD FMSSEMDSWR QTMVAISCKN LKHVLVVCAK 180 AIAENDLLMA QRLMDELRQM VSVSGEPIQR LGAYMLEGLV ARLSSSGSSI YRALRCKEPE 240 SAELLSYMHI LYEVCPYFKF GYMSANGAIA EAMKDEDRVH IIDFQISQGS QWITLIQAFA 300 ARPGGPPHIR ITGIDDSTSA YARGGGLHIV GKRLSKLAEH FKVPFEFHAA AISGCDVQLH 360 NLGVRPGEAL AVNFAFMLHH MPDESVSTLN HRDRLLRLVK SLSPKVVTLV EQESNTNTAA 420 FFPRFLETMD YYTAMFESID VTLPREHKER INVEQHCLAR DLVNIIACEG VERVERHEVL 480 GKWRSRFAMA GFSPYPLSSL VNGTIKKLLD NYSDRYRLEE RDGALYLGWM NRDLVASCAW 540 K

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MQASEHHRSS SMYYQPMQQV EAYCMPQYQA LNHHQYYNDG GHGIGSRFSN QSSSEIYCTL  60
ESSSATGSFN VYNSPSTVSF SPNGSPVSLQ DSQSQSYPPD NNYGSPMSGS CITDDLSTFK  120
HKLRELESVM FGPDCDNLDS YDSSFKDATD FMSSEMDSWR QTMVAISCKN LKHVLVVCAK  180
AIAENDLLMA QRLMDELRQM VSVSGEPIQR LGAYMLEGLV ARLSSSGSSI YRALRCKEPE  240
SAELLSYMHI LYEVCPYFKF GYMSANGAIA EAMKDEDRVH IIDFQISQGS QWITLIQAFA  300
ARPGGPPHIR ITGIDDSTSA YARGGGLHIV GKRLSKLAEH FKVPFEFHAA AISGCDVQLH  360
NLGVRPGEAL AVNFAFMLHH MPDESVSTLN HRDRLLRLVK SLSPKVVTLV EQESNTNTAA  420
FFPRFLETMD YYTAMFESID VTLPREHKER INVEQHCLAR DLVNIIACEG VERVERHEVL  480
GKWRSRFAMA GFSPYPLSSL VNGTIKKLLD NYSDRYRLEE RDGALYLGWM NRDLVASCAW  540
K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-62	178	540	26	378	Protein SCARECROW
5b3h_A	1e-62	178	540	25	377	Protein SCARECROW
5b3h_D	1e-62	178	540	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269\|PubMed:10817761}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016166585.1	0.0	scarecrow-like transcription factor PAT1
Refseq	XP_020962487.1	0.0	scarecrow-like transcription factor PAT1
Refseq	XP_025665647.1	0.0	scarecrow-like transcription factor PAT1
Refseq	XP_029150352.1	0.0	scarecrow-like transcription factor PAT1
Refseq	XP_029150353.1	0.0	scarecrow-like transcription factor PAT1
Swissprot	Q9LDL7	0.0	PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBL	A0A445C2S4	0.0	A0A445C2S4_ARAHY; Uncharacterized protein
STRING	XP_007142502.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	0.0	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Heyman J, et al. The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence. Nat Plants, 2016. 2(11): p. 16165 [PMID:27797356]