PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ahy018970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 139aa MW: 15850.4 Da PI: 8.8659 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.8 | 7.4e-22 | 68 | 138 | 1 | 67 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWke 67 f+kv tpsdv+k++rlv+pk++ae++ + ++e++ l +ed++g+ W+++++y+++s++yv+tkGW++ Ahy018970 68 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSR 138 89***************************955567889*******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.2E-31 | 61 | 138 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.63E-22 | 64 | 138 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.12E-18 | 66 | 138 | No hit | No description |
Pfam | PF02362 | 3.6E-19 | 68 | 138 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.856 | 68 | 139 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MNQNQPQPQP QQLVDFMDLS LGTNINHHEG INNFQGYSSS SAAATTTTTN NTNLQPPLPA 60 PAEKEHMFDK VVTPSDVGKL NRLVIPKQHA EKYFPLDSTS NEKGLLLNFE DRNGKLWRFR 120 YSYWNSSQSY VMTKGWSRX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-47 | 62 | 138 | 2 | 78 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-47 | 62 | 138 | 2 | 78 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015948137.1 | 1e-96 | B3 domain-containing protein Os03g0120900 | ||||
Refseq | XP_020990491.1 | 1e-96 | B3 domain-containing protein Os03g0120900 | ||||
Refseq | XP_025639904.1 | 1e-96 | B3 domain-containing transcription factor NGA3 | ||||
Swissprot | Q7F9W2 | 2e-48 | Y4814_ORYSJ; B3 domain-containing protein Os04g0581400 | ||||
TrEMBL | A0A445EHK7 | 9e-85 | A0A445EHK7_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA16G01951.1 | 9e-52 | (Glycine max) | ||||
STRING | XP_007135337.1 | 3e-52 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01030.1 | 1e-47 | B3 family protein |
Publications ? help Back to Top | |||
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