PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ahy018815 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | TCP | ||||||||
Protein Properties | Length: 350aa MW: 38330.7 Da PI: 6.63 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.8 | 6.7e-37 | 20 | 130 | 2 | 105 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssaseceaesssssasnsssg.....kaak 92 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l+++ +++++ ++++++ +++++ + ++++ Ahy018815 20 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDKLAELppwePTPPPPTTNEVEEDQNGGS---TdmaiaEQSE 116 79**************************************************************88885555544433344443332...1233443333 PP TCP 93 saa.kskksqksaa 105 s+ + + +++ + Ahy018815 117 SSGyNFQLQRQLGE 130 33323333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.6E-31 | 20 | 127 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.281 | 22 | 80 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MKSTGGEIVQ VQGGHIVRST GRKDRHSKVY TAKGPRDRRV RLSAHTAIQF YDVQDRLGYD 60 RPSKAVDWLI KKAKAAIDKL AELPPWEPTP PPPTTNEVEE DQNGGSTDMA IAEQSESSGY 120 NFQLQRQLGE DPENQHHHSA FIPSPIDTDG GIAFFPTTSA ASSINFQSYP PEIISRTNNS 180 SEDLGLSLHS FQDSGLIHHH GQSQQGGGAD HQNPSSNDQT LFANYQRMVA WNSDAGGTQA 240 DMNRSGFMVN SPGFSSAFSH HQQRGTLQSS FSPSLRPWSE IPQMASSNEH HHNHKSQPIQ 300 QQHQASIFGS RFLSDALPGF CIPARIQGED ESHGVGSDRP SSSASPNSHH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-22 | 27 | 80 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-22 | 27 | 80 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025671794.1 | 0.0 | transcription factor TCP4 | ||||
Refseq | XP_025671795.1 | 0.0 | transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 2e-65 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A444Y607 | 0.0 | A0A444Y607_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA13G36840.3 | 1e-180 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 4e-49 | TCP family protein |