PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ahy017995 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | GATA | ||||||||
Protein Properties | Length: 272aa MW: 30737.7 Da PI: 8.5829 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.5 | 2.2e-19 | 202 | 236 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ +Tp+WR+gp g+ktLCnaCG+++++ +l Ahy017995 202 CQHCGSEETPQWRSGPLGPKTLCNACGVRFKSGRL 236 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.5E-15 | 196 | 246 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.176 | 196 | 232 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.75E-15 | 198 | 259 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.2E-14 | 200 | 234 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 7.05E-16 | 201 | 249 | No hit | No description |
Pfam | PF00320 | 4.3E-17 | 202 | 236 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 202 | 227 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
XVSFLSSQFQ LLQQLSVTQK VAKLKAFELG MEVPGTVDDL LDFSSDVGED NDAVVDRRRK 60 GFPCNPECKQ PSFNPLAMDD PNYSFSEFAE EELEWLSNKD AFPAVETFVD IPSIQPNMSK 120 HQGTASVLEY RRSIPNNNCT NNITLLNGFD HLKVPVRARS KCRSRPRLAI ADVSSHQSWW 180 RLSSREISGV EVIKIPTIGR KCQHCGSEET PQWRSGPLGP KTLCNACGVR FKSGRLVPEY 240 RPATSPTFRH ELHSNSHRKI IEMRKQKQMG MV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025633062.1 | 0.0 | GATA transcription factor 1 | ||||
TrEMBL | A0A445AHJ2 | 0.0 | A0A445AHJ2_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA10G25480.1 | 1e-104 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 1e-41 | GATA transcription factor 9 |