PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ahy017885 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 347aa MW: 38153.2 Da PI: 8.4888 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 90.9 | 2.7e-28 | 42 | 116 | 3 | 75 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..ea 75 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLlq+ k i++l+ ++ ++ + + Ahy017885 42 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLGQPSKVIDWLLQATKLDIDKLPPLQIPPGFAQfhHQ 116 78*************************************************************777663333222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.1E-24 | 43 | 111 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.022 | 43 | 101 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 347 aa Download sequence Send to blast |
MSSSKSSYEA KQEDEGGGGT SSSRQWTAFR NPRIVRVSRS LGGKDRHSKV CTIRGLRDRR 60 IRLSVPTAIQ LYDLQDRLGL GQPSKVIDWL LQATKLDIDK LPPLQIPPGF AQFHHQQTLI 120 PLSHHHQFSL GGFYDANSTR FWDLDSSSIS LKGKESDTIT HPAGVISEKG KWIKTNQHVD 180 ENQDGLLLLN NAMGYNSPSG LTLSSSSSSS QFGSHALLFP SQQLLDPHSS NGVPQFSSSS 240 ATTPSTFTPY YAPFLANSSS STTTTMVENN SDALRQFNHI QILSSQVMPH PFIPSSSLFH 300 SINSNNNNND NNSAAATIRR IPMPFSSKLL DSDNNNNESN QEDHKGT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-18 | 48 | 102 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-18 | 48 | 102 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025629475.1 | 0.0 | transcription factor TCP5 | ||||
Refseq | XP_025629476.1 | 0.0 | transcription factor TCP5 | ||||
Refseq | XP_025629477.1 | 0.0 | transcription factor TCP5 | ||||
TrEMBL | A0A445AZ79 | 0.0 | A0A445AZ79_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA04G32324.1 | 2e-94 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60970.1 | 7e-52 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |