PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy017833
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 139aa    MW: 15695.3 Da    PI: 9.5974
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59515811PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.7e-142466246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     g++T +Ed+l+  + +  G++ W++Ia+ ++ gRt++++k++w++
        Ahy017833 24 GAFTDDEDKLISTLYATIGSR-WSLIAAQLP-GRTDNDVKNHWNT 66
                     89*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.344117IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.3E-11329IPR009057Homeodomain-like
SuperFamilySSF466893.29E-23472IPR009057Homeodomain-like
PROSITE profilePS5129421.1761872IPR017930Myb domain
SMARTSM007172.0E-122270IPR001005SANT/Myb domain
PfamPF002493.1E-132466IPR001005SANT/Myb domain
CDDcd001672.25E-102568No hitNo description
Gene3DG3DSA:1.10.10.601.3E-183069IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
XLKRCGKSCR LRWLNYLRPH IKHGAFTDDE DKLISTLYAT IGSRWSLIAA QLPGRTDNDV  60
KNHWNTKLRK KFFAGGINTA NATTVLNTAS SKFPTFTPQI EAFDHNNNTP TTCFESAVLD  120
LYQTPFPVPS KMLPLESDX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-2147260128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025671013.18e-98transcription factor MYB87-like
SwissprotQ9FKL21e-37MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A445DUV82e-96A0A445DUV8_ARAHY; Uncharacterized protein
STRINGXP_007160258.12e-49(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-39myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]