PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy017748

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 760aa MW: 87816.2 Da PI: 7.9069

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59521887	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.7	2.5e-20	43	117	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 kfY +YA++vGF+vr+ + ++s+ ng++ +r++vCskeg++ + +rtgC a ++v+ + +gkw+v++++++HnH+l Ahy017748 43 KFYTSYANRVGFKVRIGQLYRSRSNGSVSSRRYVCSKEGYQLS--------------SRTGCPAFIRVQINASGKWVVDHFQKDHNHDL 117 6************************************9765..............689*************************99 PP
2	FAR1	64	4.2e-20	196	270	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY++YA vGF vr+ + +sk++g it+r+fvCskeg++++ +r+gC a l++k++ +gkw+v++l+++HnH+l Ahy017748 196 QFYHAYAAYVGFGVRIGQLFRSKNDGLITSRRFVCSKEGFQHP--------------SRVGCGAYLRIKRQPSGKWVVDRLHKDHNHDL 270 6*************************************999..............4899************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-16	43	117	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	3.9E-16	196	270	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-26	370	463	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.151	646	682	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.0E-8	653	679	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.2E-7	657	684	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 760 aa Download sequence Send to blast
MILKENPVGT ELAMSNINVE EEIDFSCEPY IGLEFDSPDD ALKFYTSYAN RVGFKVRIGQ 60 LYRSRSNGSV SSRRYVCSKE GYQLSSRTGC PAFIRVQINA SGKWVVDHFQ KDHNHDLEIE 120 NGNCTPTVQQ KGAAAFKSFT EVSRRPRKKL LESCNESSGP MGIIDFKRLR KEELEGQFRT 180 EPYVGQEFGS PNEAYQFYHA YAAYVGFGVR IGQLFRSKND GLITSRRFVC SKEGFQHPSR 240 VGCGAYLRIK RQPSGKWVVD RLHKDHNHDL GSEREGRPKS IPDSNILAEE VDTGFVNGDL 300 FRIDNYPVPR GTRQNHIKSD WYSMLLEYFQ SRQAEDTGFF YAVEVDNGNC MSLFWADGRS 360 RYSCSQFGDV LVIDTSYRKS VYLVPFATFI GVNHHRQPVL LGSALIADES EESFAWLFQT 420 WLRAASGRQP LSIIADQDIA IQRAIRKVFP RTHHRFSLWQ IKAKEQENLG IMGDGFTKDY 480 DKCIYQSQTV DEFDATWAAL LNKYGLKDNP WLKEMYEKRA SWVPLYLRGT FFAGIPMNES 540 VDSFFGAILN GQTSLVEFIP RYERGLERRR EEERNEDFNT SNFQPFLQTK EPVEEQCRRL 600 YTLTIFKVLQ KELLQCYSYL GFKAFQEGSI SRYMVRKGGN DMEKHHIVTF NASNLSISCS 660 CQMFEYEGVL CRHALRVFQI LELREVPSRY ILHRWTKNAE DGVFPDLESW SSSQELRSLM 720 LWSLRETAAK YIDAGATSIE KYKLAYEILR EGGRKLCWHR

Sequence ? help Back to Top

Protein Sequence Length: 760 aa Download sequence Send to blast

MILKENPVGT ELAMSNINVE EEIDFSCEPY IGLEFDSPDD ALKFYTSYAN RVGFKVRIGQ  60
LYRSRSNGSV SSRRYVCSKE GYQLSSRTGC PAFIRVQINA SGKWVVDHFQ KDHNHDLEIE  120
NGNCTPTVQQ KGAAAFKSFT EVSRRPRKKL LESCNESSGP MGIIDFKRLR KEELEGQFRT  180
EPYVGQEFGS PNEAYQFYHA YAAYVGFGVR IGQLFRSKND GLITSRRFVC SKEGFQHPSR  240
VGCGAYLRIK RQPSGKWVVD RLHKDHNHDL GSEREGRPKS IPDSNILAEE VDTGFVNGDL  300
FRIDNYPVPR GTRQNHIKSD WYSMLLEYFQ SRQAEDTGFF YAVEVDNGNC MSLFWADGRS  360
RYSCSQFGDV LVIDTSYRKS VYLVPFATFI GVNHHRQPVL LGSALIADES EESFAWLFQT  420
WLRAASGRQP LSIIADQDIA IQRAIRKVFP RTHHRFSLWQ IKAKEQENLG IMGDGFTKDY  480
DKCIYQSQTV DEFDATWAAL LNKYGLKDNP WLKEMYEKRA SWVPLYLRGT FFAGIPMNES  540
VDSFFGAILN GQTSLVEFIP RYERGLERRR EEERNEDFNT SNFQPFLQTK EPVEEQCRRL  600
YTLTIFKVLQ KELLQCYSYL GFKAFQEGSI SRYMVRKGGN DMEKHHIVTF NASNLSISCS  660
CQMFEYEGVL CRHALRVFQI LELREVPSRY ILHRWTKNAE DGVFPDLESW SSSQELRSLM  720
LWSLRETAAK YIDAGATSIE KYKLAYEILR EGGRKLCWHR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015958695.1	0.0	protein FAR1-RELATED SEQUENCE 7
Refseq	XP_015958696.1	0.0	protein FAR1-RELATED SEQUENCE 7
Refseq	XP_016197380.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_016197381.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_025645767.1	0.0	protein FAR1-RELATED SEQUENCE 7
Refseq	XP_025645768.1	0.0	protein FAR1-RELATED SEQUENCE 7
Refseq	XP_025693782.1	0.0	protein FAR1-RELATED SEQUENCE 7
Refseq	XP_025693783.1	0.0	protein FAR1-RELATED SEQUENCE 7
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A3Q0FJX9	0.0	A0A3Q0FJX9_VIGRR; uncharacterized protein LOC111242705
STRING	XP_007147816.1	0.0	(Phaseolus vulgaris)

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]