PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ahy016901 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | GRF | ||||||||
Protein Properties | Length: 215aa MW: 23672 Da PI: 10.4934 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.8 | 1e-24 | 128 | 171 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e Ahy016901 128 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVE 171 79***************************************998 PP | |||||||
2 | QLQ | 64.3 | 3.2e-22 | 62 | 98 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +aFT++Q+++L++Q+l+yKy+ an+PvP++Ll +i+k Ahy016901 62 GAFTPSQWMELEQQALIYKYITANVPVPSHLLIPIKK 98 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.9E-13 | 62 | 98 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.4E-16 | 63 | 96 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.737 | 63 | 98 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.847 | 128 | 172 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.8E-21 | 129 | 171 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
XSSSLLRSNA TLFSDVSGNQ QQQQMLSFSS PYHYLPLSRN TGCHSWGSNS MHGNGNGIGM 60 RGAFTPSQWM ELEQQALIYK YITANVPVPS HLLIPIKKAL HSAGFSHFFR PSAVGWAGFH 120 LGFSNSTDPE PGRCRRTDGK KWRCSRDAVV DQKYCERHMN RGRHRSRKPV EGHNGHALTG 180 TTTSSTTKNV VPGNTPPPPP SNTLTYSSPP NTISX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:21036927}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015935173.1 | 1e-156 | growth-regulating factor 1 | ||||
Refseq | XP_025613484.1 | 1e-156 | growth-regulating factor 1 | ||||
Swissprot | Q8L8A8 | 4e-56 | GRF2_ARATH; Growth-regulating factor 2 | ||||
TrEMBL | A0A445BUL9 | 1e-155 | A0A445BUL9_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA17G35100.2 | 4e-82 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 9e-57 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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