PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy016739
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 318aa    MW: 36669.9 Da    PI: 9.9566
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59551264PU_refUnigeneView CDS
PUT-171a-Arachis_hypogaea-22285PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.24.7e-1681001100
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                ffk+   s +l++g+l lpk+f +++g +   +k + l+ ++g +W+v    + ++ ++v+++GWkeFv    ++ g ++ F+++g+s+    v++++ks
  Ahy016739   8 FFKII-ISQSLQQGILKLPKNFSRKYGAS--LPKPVFLKPPNGTEWKVDW--TMHDAAVVFENGWKEFVTYYSIDHGHVLKFEYNGNSKL--GVQICDKS 100
                56655.678888999***********977..6677***************..********************************997666..89999985 PP
2B341.52.4e-13221315198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                ff + +++  l ++r  +p +f++++ ++k +     +   +++ W +kl  y  k++++ l++GW+ F+ka +L++gD+++F+l++ ++ e+ v++fr
  Ahy016739 221 FFIINVTKKFLDQSRPNVPIDFVKKYLKQK-Q---YAMVRFRNKLWPLKLlPYVTKKESIRLSTGWNLFAKASELQAGDVCIFELINMKNSEFDVHFFR 315
                66777888888999999*********5443.3...55666677*******555888889**************************97777778999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-203101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-203100IPR015300DNA-binding pseudobarrel domain
CDDcd100179.11E-14798No hitNo description
PROSITE profilePS5086313.2117100IPR003340B3 DNA binding domain
SMARTSM010197.1E-148100IPR003340B3 DNA binding domain
PfamPF023623.8E-13899IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-17214315IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-17215316IPR015300DNA-binding pseudobarrel domain
CDDcd100175.54E-14220315No hitNo description
SMARTSM010195.4E-5221317IPR003340B3 DNA binding domain
PROSITE profilePS5086312.21221317IPR003340B3 DNA binding domain
PfamPF023625.7E-11221315IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MTSKPVLFFK IIISQSLQQG ILKLPKNFSR KYGASLPKPV FLKPPNGTEW KVDWTMHDAA  60
VVFENGWKEF VTYYSIDHGH VLKFEYNGNS KLGVQICDKS GLEIKYPFNV NQQEKVNIIE  120
ISDEEVQAFD EMPQRQNNRR KSPKSQLNQR NGNQSQGTSF LKSTSTSIEK ELDGDEEDKS  180
KDGISIKDRK ETQTTSKVTS PLAETSGTLK EAEKFTSKNP FFIINVTKKF LDQSRPNVPI  240
DFVKKYLKQK QYAMVRFRNK LWPLKLLPYV TKKESIRLST GWNLFAKASE LQAGDVCIFE  300
LINMKNSEFD VHFFRCHS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025624960.10.0B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_025624961.10.0B3 domain-containing transcription factor VRN1 isoform X1
RefseqXP_029145165.10.0B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLA0A445B0T80.0A0A445B0T8_ARAHY; Uncharacterized protein