PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy016667

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 465aa MW: 50806.6 Da PI: 9.5516

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S58471025	PU_ref	Unigene	View CDS
PUT-171a-Arachis_hypogaea-22294	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4.1e-05	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Ahy016667 60 FICEICSKGFQRDQNLQLHRRGH 82 89*******************88 PP
2	zf-C2H2	12.7	0.00038	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Ahy016667 137 WKCHKCSKKYAVQSDWKAHSKTC 159 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.18E-6	59	82	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.4E-5	59	82	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.047	60	82	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.783	60	82	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	62	82	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	102	132	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.18E-6	132	157	No hit	No description
SMART	SM00355	140	137	157	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
QKLKSIPIPE AEMMNPNPNN KGSEEGGVIQ KKKRNHPGTP DPEAEVIALS PKTLMATNRF 60 ICEICSKGFQ RDQNLQLHRR GHNLPWKLRQ RSNKEPVRKK VYTCPEKSCV HHDASRALGD 120 LTGIKKHFSR KHGEKKWKCH KCSKKYAVQS DWKAHSKTCG TREYKCDCGT LFSRKDSFIT 180 HRAFCDALAL ETSSLLLPPS TTNLNFHTQQ PPPPPSHALI PPLHFNHSPN LSLWLNHHQQ 240 HATSSHDNSN LVGLYHHNAS SSLPLPDIVQ MNNFTHNSNS ANHLSLSSSS LPAIGKSSDN 300 LASIYTSDGQ STTTDNNNNQ LSPMSATALL QKAAQMGSTR STTTPSIFSA TFGVMTSSSS 360 NNSNHNAHAG DFASTSSFSS FTHSSNTYDH LVVQTAAQNS TTDPAGNLKL PHHAGSNSAS 420 MEHNLTRDFL GVSGAGEGPA GLHQFLPQEL AKFASSMGLT QFTTN

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

QKLKSIPIPE AEMMNPNPNN KGSEEGGVIQ KKKRNHPGTP DPEAEVIALS PKTLMATNRF  60
ICEICSKGFQ RDQNLQLHRR GHNLPWKLRQ RSNKEPVRKK VYTCPEKSCV HHDASRALGD  120
LTGIKKHFSR KHGEKKWKCH KCSKKYAVQS DWKAHSKTCG TREYKCDCGT LFSRKDSFIT  180
HRAFCDALAL ETSSLLLPPS TTNLNFHTQQ PPPPPSHALI PPLHFNHSPN LSLWLNHHQQ  240
HATSSHDNSN LVGLYHHNAS SSLPLPDIVQ MNNFTHNSNS ANHLSLSSSS LPAIGKSSDN  300
LASIYTSDGQ STTTDNNNNQ LSPMSATALL QKAAQMGSTR STTTPSIFSA TFGVMTSSSS  360
NNSNHNAHAG DFASTSSFSS FTHSSNTYDH LVVQTAAQNS TTDPAGNLKL PHHAGSNSAS  420
MEHNLTRDFL GVSGAGEGPA GLHQFLPQEL AKFASSMGLT QFTTN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-34	133	195	3	65	Zinc finger protein JACKDAW
5b3h_F	2e-34	133	195	3	65	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	99	KLRQRSNKEPVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269\|PubMed:21265895, ECO:0000269\|PubMed:25829440, ECO:0000269\|PubMed:25929516}.
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.
UniProt	Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269\|PubMed:17785527, ECO:0000269\|PubMed:21935722, ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269\|PubMed:16640459}.
UniProt	INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269\|PubMed:21935722}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025635152.1	0.0	zinc finger protein JACKDAW-like
Refseq	XP_025663944.1	0.0	zinc finger protein JACKDAW-like
Swissprot	Q9FFH3	1e-110	IDD8_ARATH; Zinc finger protein NUTCRACKER
Swissprot	Q9LVQ7	1e-109	IDD1_ARATH; Zinc finger protein ENHYDROUS
Swissprot	Q9ZWA6	1e-109	IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBL	A0A445E772	0.0	A0A445E772_ARAHY; Uncharacterized protein
STRING	GLYMA03G33700.1	1e-160	(Glycine max)

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Muñoz-Strale D,León G Identification of two highly specific pollen promoters using transcriptomic data. Plant Physiol. Biochem., 2014. 83: p. 292-9 [PMID:25208507] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Long Y, et al. In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots. Nature, 2017. 548(7665): p. 97-102 [PMID:28746306]