PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ahy016166 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 295aa MW: 32638.2 Da PI: 7.9396 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.3 | 2.7e-05 | 16 | 36 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k + +s++k Hi+t+ Ahy016166 16 CHKCSKGYAVQSDYKAHIKTC 36 *******************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 295 aa Download sequence Send to blast |
XNPSKKNPAN HKQWFCHKCS KGYAVQSDYK AHIKTCGTRG HSCDCGRVFS RVESFIEHQD 60 ACTVRQHRPE LQALQPACSS RTASSTSPSS DANFTVTAPL QPLPPPPPPL PPPSEIHRNN 120 TNTHNLELQL LPSSINSRQN HETRLRLAIG GDNGRSVEEE RNNNNNVMMV GDSSSTLEVA 180 RLKECAGQEL KLAMAEKAYA EEARREAKRQ IEIAELEFEN AKRIRKQAQA ELGKAEALRK 240 QAIKKMTSTL MEITCHACKQ NFHSSNNGVG VPSEETSIVM SYMSSANNTD DGEAE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 7e-18 | 12 | 62 | 5 | 55 | Zinc finger protein JACKDAW |
5b3h_F | 7e-18 | 12 | 62 | 5 | 55 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025691518.1 | 0.0 | zinc finger protein SHOOT GRAVITROPISM 5 | ||||
Swissprot | F4IPE3 | 5e-76 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A0A444ZSJ3 | 0.0 | A0A444ZSJ3_ARAHY; Uncharacterized protein | ||||
STRING | XP_004504608.1 | 1e-125 | (Cicer arietinum) | ||||
STRING | GLYMA05G26780.2 | 1e-125 | (Glycine max) |
Publications ? help Back to Top | |||
---|---|---|---|
|