PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy016161

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

CAMTA

Protein Properties

Length: 403aa MW: 45043.9 Da PI: 4.9309

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59547770	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	94.3	1.1e-29	1	62	57	118
CG-1 57 wkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 wkkkkdgktv+E+he+LKvg+ e +++yYah+++np f rrcywlL+++le+ivlvhy+e++ Ahy016161 1 WKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPGFVRRCYWLLDKSLEHIVLVHYRETQ 62 ***********************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	47.625	1	67	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	5.3E-15	1	62	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.7E-24	1	60	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	9.1E-6	250	364	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	1.09E-16	276	362	IPR014756	Immunoglobulin E-set
Pfam	PF01833	1.3E-4	277	361	IPR002909	IPT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
WKKKKDGKTV KEAHEHLKVG NEERIHVYYA HGQDNPGFVR RCYWLLDKSL EHIVLVHYRE 60 TQELQASPAA PINSHSSSGS DPNAPWILSE EIDSGIKTTN AGEINNNITV KSHEQRLHEI 120 NTLEWDDLVV ANDPNTSTIN GGGKVPHFDQ QNQSNLSNQV ANNLSAEIPS FDNLTQPIAG 180 SHTFPENLNL QTDNQMNPNE QINHNVLVNG VFLDTLGNGG LQSQDSFGMW VNHMLSDSPC 240 SVDESAVESS VSSIHESYSS LVGDDKQTSL PEQVFNLTDV SPAWVPSTEK SKILVTGFFH 300 KDADLSKSNL LCVCGDVSVP VECVQVGVYR CWVPPHSPGF VNLYLSFDGH KPISQVVNFE 360 YRTPILHDPA AFMENNDNWD KFQFEMRLSY LLFTKKNSLD VFS

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

WKKKKDGKTV KEAHEHLKVG NEERIHVYYA HGQDNPGFVR RCYWLLDKSL EHIVLVHYRE  60
TQELQASPAA PINSHSSSGS DPNAPWILSE EIDSGIKTTN AGEINNNITV KSHEQRLHEI  120
NTLEWDDLVV ANDPNTSTIN GGGKVPHFDQ QNQSNLSNQV ANNLSAEIPS FDNLTQPIAG  180
SHTFPENLNL QTDNQMNPNE QINHNVLVNG VFLDTLGNGG LQSQDSFGMW VNHMLSDSPC  240
SVDESAVESS VSSIHESYSS LVGDDKQTSL PEQVFNLTDV SPAWVPSTEK SKILVTGFFH  300
KDADLSKSNL LCVCGDVSVP VECVQVGVYR CWVPPHSPGF VNLYLSFDGH KPISQVVNFE  360
YRTPILHDPA AFMENNDNWD KFQFEMRLSY LLFTKKNSLD VFS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016197980.1	0.0	calmodulin-binding transcription activator 5 isoform X3
Swissprot	O23463	1e-114	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A445AWG8	0.0	A0A445AWG8_ARAHY; Uncharacterized protein
STRING	GLYMA07G37090.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	1e-110	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]