PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ahy016006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 187aa MW: 20566.8 Da PI: 6.1454 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.4 | 3.3e-10 | 128 | 186 | 1 | 54 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrk 54 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr+ Ahy016006 128 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELIAKDLHGVEWKFRHIYRG 186 99****************************963.3445679***************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.71E-30 | 120 | 187 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.7E-22 | 122 | 186 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.39E-11 | 126 | 186 | No hit | No description |
Pfam | PF02362 | 2.6E-8 | 128 | 185 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
SSSSSSSSSA VSSSSYLELW HACAGPLTSL PKKGNVVVYF PQGHLEQAAS FSPFTPLEIP 60 THDLQPQIFC RVVNVQLLAN KENDEVYTQV TLLPQAELAG MGKELLEELG ADEEGNGRTP 120 TKTTPHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYK QQRPSQELIA KDLHGVEWKF 180 RHIYRGX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 6e-57 | 3 | 186 | 7 | 182 | Auxin response factor 1 |
4ldw_A | 6e-57 | 3 | 186 | 7 | 182 | Auxin response factor 1 |
4ldw_B | 6e-57 | 3 | 186 | 7 | 182 | Auxin response factor 1 |
4ldx_A | 6e-57 | 3 | 186 | 7 | 182 | Auxin response factor 1 |
4ldx_B | 6e-57 | 3 | 186 | 7 | 182 | Auxin response factor 1 |
4ldy_A | 6e-57 | 3 | 186 | 7 | 182 | Auxin response factor 1 |
4ldy_B | 6e-57 | 3 | 186 | 7 | 182 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016169833.1 | 1e-130 | auxin response factor 4 | ||||
Refseq | XP_025671955.1 | 1e-130 | auxin response factor 4 | ||||
Swissprot | Q9ZTX9 | 4e-92 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A444Y7W7 | 1e-128 | A0A444Y7W7_ARAHY; Auxin response factor | ||||
TrEMBL | A0A444Y813 | 1e-128 | A0A444Y813_ARAHY; Auxin response factor | ||||
STRING | GLYMA12G29280.1 | 1e-110 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 2e-86 | auxin response factor 4 |