PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ahy015806 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 355aa MW: 39071.1 Da PI: 6.9111 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.0001 | 278 | 300 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Ahy015806 278 FMCRKCGKAFAVRGDWRTHEKNC 300 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.36E-5 | 190 | 216 | No hit | No description |
PROSITE profile | PS50157 | 9.64 | 194 | 221 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.3E-6 | 194 | 213 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.58 | 194 | 216 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 196 | 216 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.61E-6 | 259 | 298 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.5E-6 | 265 | 298 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.808 | 278 | 298 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 49 | 278 | 298 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
XFIHPSMANN NSSYSNLFFS SSSSSSSSSF SSPPTPAPPP FFQFNHRYFP YYYHHHHTTT 60 ASAPFSYSSS STTSPPSPPL REELPLLTLS PARPDTNHHP SCSTTSMDFD EEDDADADDA 120 DADATDAADA TTVTVALTXX PSPSAAEMAS VLSEKEHGGG GEDSGGGGST GNKVNKGQYW 180 IPTPSQILIG PTQFSCPVCC KTFNRYNNMQ MHMWGHGSQY RKGPESLRGT QPTGMLRLPC 240 YCCAPGCRNN IDHPRSKPLK DFRTLQTHYK RKHGIKPFMC RKCGKAFAVR GDWRTHEKNC 300 GKLWYCICGS DFKHKRSLKD HIKAFGSGHA AYGIDGFEED DDPASEVEQD HESTX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016207458.1 | 1e-175 | zinc finger protein WIP2 | ||||
Refseq | XP_025663020.1 | 1e-175 | zinc finger protein WIP2 | ||||
Swissprot | Q9SVY1 | 1e-136 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A444YHE6 | 1e-174 | A0A444YHE6_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA03G29610.2 | 1e-160 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-126 | C2H2 family protein |
Publications ? help Back to Top | |||
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