PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy015367
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-YB
Protein Properties Length: 128aa    MW: 13917.7 Da    PI: 4.7973
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59547511PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB177.21.6e-5535128295
      NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                reqdrflPian+srimkk lPan+ki+kdak+t+qecvsefisf+tsea +kcq+ekrktingddllwa+atlGfedy+eplkvyl+++releg
  Ahy015367  35 REQDRFLPIANISRIMKKGLPANGKIAKDAKDTMQECVSEFISFITSEACEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARFRELEG 128
                89*****************************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.7E-5133127IPR009072Histone-fold
SuperFamilySSF471132.33E-3937127IPR009072Histone-fold
PfamPF008082.0E-2940104IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.3E-206886No hitNo description
PROSITE patternPS0068507187IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.3E-2087105No hitNo description
PRINTSPR006151.3E-20106124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MADAPTSPAN GSHESGGEQS PQESSSGGLC GAGAREQDRF LPIANISRIM KKGLPANGKI  60
AKDAKDTMQE CVSEFISFIT SEACEKCQKE KRKTINGDDL LWAMATLGFE DYIEPLKVYL  120
ARFRELEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-4635125393NF-YB
4awl_B2e-4635125494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-4635125494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015941015.15e-92nuclear transcription factor Y subunit B-1
RefseqXP_025619810.15e-92nuclear transcription factor Y subunit B-1
RefseqXP_025619811.15e-92nuclear transcription factor Y subunit B-1
SwissprotQ8VYK48e-64NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A445BH331e-90A0A445BH33_ARAHY; Uncharacterized protein
STRINGcassava4.1_017552m4e-73(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.38e-64nuclear factor Y, subunit B1
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]