PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy015116
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 234aa    MW: 26040.5 Da    PI: 4.6782
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S54184530PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.52.8e-1672108135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++Cgt +  Tp +Rrgp+g+++LCnaCGl+++ kg+
  Ahy015116  72 CQHCGTGEksTPAMRRGPSGPRSLCNACGLMWANKGT 108
                ******9999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510178.601143IPR010402CCT domain
PfamPF062034.3E-91242IPR010402CCT domain
PROSITE profilePS501149.28866123IPR000679Zinc finger, GATA-type
SMARTSM004012.3E-1366119IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.81E-1268120No hitNo description
Gene3DG3DSA:3.30.50.102.4E-1570113IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.56E-1571114No hitNo description
PROSITE patternPS0034407299IPR000679Zinc finger, GATA-type
PfamPF003204.4E-1472108IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDTANQQIMG KAKRPSFEKK IRYTCRKEVA QRMHRKNGQF ASLKEGYKSP AENFDSSNGG  60
GDTYSQSIER RCQHCGTGEK STPAMRRGPS GPRSLCNACG LMWANKGTLR DLSKASRITF  120
EQNGQDTSAD IKPSPTEPEN SSPDQNEDIC LEEAKPVPID SRQSPERNND QYTVDTAEAV  180
TNDSSIQMEN NALSIHREDN KLEDFADASG TEFDIPACFD EQVDIDIDDS NMRT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015943567.11e-162GATA transcription factor 24 isoform X1
RefseqXP_015943568.11e-162GATA transcription factor 24 isoform X2
RefseqXP_025622252.11e-162GATA transcription factor 24 isoform X1
RefseqXP_025622253.11e-162GATA transcription factor 24 isoform X2
SwissprotQ8GXL71e-36GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A445BAN91e-160A0A445BAN9_ARAHY; Uncharacterized protein
STRINGXP_004504860.11e-109(Cicer arietinum)
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]