PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ahy014827 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NF-YC | ||||||||
Protein Properties | Length: 124aa MW: 14557.5 Da PI: 6.3499 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 181.2 | 8.8e-57 | 15 | 119 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdivp Ahy014827 15 QLQMFWSYQrqeIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 114 89*****998899*************************************************************************************** PP NF-YC 98 rdelk 102 rd++k Ahy014827 115 RDDIK 119 **975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.89E-34 | 11 | 109 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.9E-21 | 37 | 100 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.4E-37 | 38 | 115 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
XAAPFHHLLQ QQQQQLQMFW SYQRQEIEHV NDFKNHQLPL ARIKKIMKAD EDVRMISAEA 60 PILFAKACEL FILELTIRSW LHAEENKRRT LQKNDIAAAI TRTDIFDFLV DIVPRDDIKD 120 DAAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-54 | 23 | 115 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 87 | 93 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015937880.1 | 3e-87 | nuclear transcription factor Y subunit C-1 | ||||
Refseq | XP_016169923.2 | 3e-87 | LOW QUALITY PROTEIN: nuclear transcription factor Y subunit C-1 | ||||
Refseq | XP_025616091.1 | 4e-87 | nuclear transcription factor Y subunit C-1 | ||||
Refseq | XP_025671541.1 | 3e-87 | nuclear transcription factor Y subunit C-1 | ||||
Swissprot | Q9SMP0 | 2e-72 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A444XWF9 | 4e-85 | A0A444XWF9_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA06G17780.1 | 4e-83 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 6e-74 | nuclear factor Y, subunit C1 |
Publications ? help Back to Top | |||
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