PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ahy014697 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C3H | ||||||||
Protein Properties | Length: 138aa MW: 15737.6 Da PI: 8.2119 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.6 | 1.3e-10 | 62 | 85 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++lC +f tG+C+yG++Ck+ H+ Ahy014697 62 QPLCYNFVNTGFCRYGNSCKYLHP 85 58*********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.75E-16 | 4 | 53 | No hit | No description |
Pfam | PF06220 | 6.7E-9 | 5 | 39 | IPR013085 | Zinc finger, U1-C type |
PROSITE profile | PS50103 | 14.962 | 59 | 87 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 60 | 86 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-7 | 62 | 86 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-8 | 63 | 85 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.1E-7 | 64 | 84 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MPARKFYCDY CDKQFPDTAA DRKRHERGIQ HQQAKARWYD SFKHEQQQQF PSNAPLPQGM 60 PQPLCYNFVN TGFCRYGNSC KYLHPNANNA PHASMISAPN PSGNVVLQDR TGLSWDNLPP 120 SLQPPPEAGY PSLPFVDW |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016174012.1 | 3e-99 | zinc finger CCCH domain-containing protein 3 | ||||
Refseq | XP_016174013.1 | 3e-99 | zinc finger CCCH domain-containing protein 3 | ||||
Refseq | XP_025679441.1 | 3e-99 | zinc finger CCCH domain-containing protein 3 | ||||
Refseq | XP_025679442.1 | 3e-99 | zinc finger CCCH domain-containing protein 3 | ||||
Swissprot | Q0JP11 | 1e-32 | C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A444XJE2 | 7e-98 | A0A444XJE2_ARAHY; Uncharacterized protein | ||||
STRING | XP_007145029.1 | 5e-53 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 1e-34 | C3H family protein |
Publications ? help Back to Top | |||
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