PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy014553

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

DBB

Protein Properties

Length: 293aa MW: 32033.8 Da PI: 4.7833

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59558489	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.3	1.2e-06	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC +C ++ H H++vpl Ahy014553 4 QCNVCEAAEAKVLCCADEAALCWECDEKVHAAnklaskHQRVPL 47 7****99*******************66899999999986 PP
2	zf-B_box	28.5	3.1e-09	54	94	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 ++kC+ ++e +fC +++ llC++C +++H H Ahy014553 54 MPKCDICQEAFGYFFCLEDRALLCRKCDVAIHTAntyvsgH 94 799*****9*******************654455555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.765	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	8.00E-9	3	47	No hit	No description
SMART	SM00336	8.3E-11	4	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.5E-5	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	3.0E-15	52	99	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.101	52	99	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.4E-7	54	95	IPR000315	B-box-type zinc finger
CDD	cd00021	1.22E-8	55	99	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MKIQCNVCEA AEAKVLCCAD EAALCWECDE KVHAANKLAS KHQRVPLSMS SSHMPKCDIC 60 QEAFGYFFCL EDRALLCRKC DVAIHTANTY VSGHQRFLLT GVRVGLEATE PGGTSSTSLK 120 SDSGEKASDT KSSSVSRKVS TMPQSSDYNE MLPLDAGGVG EMPPAKESYG GGSTAGNISP 180 WPIEEFLGLN DFGQGYNYME GSSKADSGKL GDSDSPVLRS VEEEMGMEDD DEYLSRVPDS 240 PWTVQQVPSP PTASGLYWPK DPQFSSDHAM FVPDICCSPM QETRYSRRRR HHL

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269\|PubMed:18182030, ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:18796637, ECO:0000269\|PubMed:21070414, ECO:0000269\|PubMed:21427283}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:18182030}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025610797.1	0.0	B-box zinc finger protein 22
Swissprot	Q9SYM2	2e-90	BBX22_ARATH; B-box zinc finger protein 22
TrEMBL	A0A445CHS6	0.0	A0A445CHS6_ARAHY; Uncharacterized protein
STRING	XP_004488990.1	1e-161	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	8e-86	light-regulated zinc finger protein 1