PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy014535
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 329aa    MW: 36855.9 Da    PI: 9.8999
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S54189632PU_unrefUnigeneView CDS
gnl|UG|Ahy#S58459376PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-056688123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C+k F r  nL+ H r H
  Ahy014535 66 FVCEICKKGFQRDQNLQLHRRGH 88
               89*******************88 PP
2zf-C2H210.70.0017144165223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                kC++C+k +  +s+ k H + +
  Ahy014535 144 KCEKCSKKYAVHSDWKAHTKIC 165
                8*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.53E-66588No hitNo description
Gene3DG3DSA:3.30.160.605.9E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0396688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6376688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM0035590108138IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.53E-6138163No hitNo description
SMARTSM00355150143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MMMSSSEAFS SSPSAAAPSS SSIIHYGNPN SIPGVAKRKR SQPGRPDPEA EVIALSPKSL  60
MATNRFVCEI CKKGFQRDQN LQLHRRGHNL PWKLRQREKE EVVRKKVYVC PEKSCVHHES  120
SRALGDLTGI KKHYSRKHGE KKLKCEKCSK KYAVHSDWKA HTKICGTREY RCHCGTLFSR  180
KDSFLTHRSF CQALPQPINS QFHTASSMAP PSLPLWLDQT INQDNKLGDL FYSSSSSSTL  240
MSATALLQKA TQMESTPIAS NNDNNAFVGF MLSSSSQFSS FNNDSNLMQH PLGLTRDFLG  300
VGVTTRFMNN PMGSLVDLQT NPLHHQEYM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-29139196360Zinc finger protein JACKDAW
5b3h_F6e-29139196360Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194105RQREKEEVVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016169909.10.0protein indeterminate-domain 9
RefseqXP_025669365.10.0zinc finger protein BALDIBIS
RefseqXP_025669366.10.0zinc finger protein BALDIBIS
RefseqXP_025669368.10.0zinc finger protein BALDIBIS
RefseqXP_025669369.10.0zinc finger protein BALDIBIS
SwissprotO227591e-100IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A444Y7X10.0A0A444Y7X1_ARAHY; Uncharacterized protein
STRINGGSMUA_Achr2P08910_0011e-106(Musa acuminata)
STRINGXP_004295016.11e-105(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-82C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]