PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy014534

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

GRAS

Protein Properties

Length: 547aa MW: 61653.8 Da PI: 5.9224

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59553171	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	417.2	1.4e-127	176	546	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l+++L++cA+avs++d + a + + l +++s +g+p+qRl ay++e+L+arl +s+s +yk+l++++ + s+e +++++++++++P+ kf++++aN Ahy014534 176 LRDVLVRCAQAVSDDDIATAIGWMDNvLGKMVSVYGEPLQRLGAYLLEGLRARLESSGSMIYKSLKCEQPT---SKELMSYMHILYQICPFWKFAYVAAN 272 5789************9988886527899***********************************9...99999***************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 Ilea+++e+++Hi+Df+i+qG+QW+ L+qaLa Rp+gpps+RiT+v++++s + le +g+rL++fA+++gvp+ef++ +a +++e ++ ++ Ahy014534 273 AVILEAMATESMIHILDFQITQGTQWLLLIQALAHRPGGPPSIRITAVDDSQSIhaRGGGLEIVGQRLSDFARSCGVPLEFHI-AAMCGSQVERTNIVIR 371 **********************************************9988889999******************9.899********* PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 gEalaVn+ + lh++ desvs+e++rd++L+lvkslsPkvv++veqe+++n++sF++rf+e ++yy+a+f+s++a+ pr++++r + E+++++r+ivn+ Ahy014534 372 AGEALAVNFPYVLHHMQDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSSFFNRFVEIMDYYTAMFESIDAGCPRDDRKRLNAEQHCVARDIVNM 471 ************************************************************************************************ PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 vaceg er+erhe l+kWr+r+++aGF++ pls ++++ ++ +l++++++ yrve+++++l+lgW++r++v+ SaW Ahy014534 472 VACEGVERVERHELLGKWRMRFSMAGFRQWPLSPSVVAAVRNMLKEFNGN-YRVEQRDDALYLGWMRRAMVTSSAW 546 ********************************************77.*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.655	150	528	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.0E-125	176	546	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence Send to blast
MQISKRHPSQ AGIRFYHQPV QSMYQMLQSN LCHSIHHDNM MKGATVSFES CKDQYFTLES 60 SPATTELIGC ETDSPSYASG LSSNRSPFSP QVSQSCYSDN HHSSDNTYGS PYSSVDDGNE 120 WKHKLRELEI SLLEPNESDA ADSYDNNCVQ GGLTTASPTI EYDWDQIVQM IPKLELRDVL 180 VRCAQAVSDD DIATAIGWMD NVLGKMVSVY GEPLQRLGAY LLEGLRARLE SSGSMIYKSL 240 KCEQPTSKEL MSYMHILYQI CPFWKFAYVA ANAVILEAMA TESMIHILDF QITQGTQWLL 300 LIQALAHRPG GPPSIRITAV DDSQSIHARG GGLEIVGQRL SDFARSCGVP LEFHIAAMCG 360 SQVERTNIVI RAGEALAVNF PYVLHHMQDE SVSTENHRDR LLRLVKSLSP KVVTLVEQES 420 NTNTSSFFNR FVEIMDYYTA MFESIDAGCP RDDRKRLNAE QHCVARDIVN MVACEGVERV 480 ERHELLGKWR MRFSMAGFRQ WPLSPSVVAA VRNMLKEFNG NYRVEQRDDA LYLGWMRRAM 540 VTSSAWC

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence Send to blast

MQISKRHPSQ AGIRFYHQPV QSMYQMLQSN LCHSIHHDNM MKGATVSFES CKDQYFTLES  60
SPATTELIGC ETDSPSYASG LSSNRSPFSP QVSQSCYSDN HHSSDNTYGS PYSSVDDGNE  120
WKHKLRELEI SLLEPNESDA ADSYDNNCVQ GGLTTASPTI EYDWDQIVQM IPKLELRDVL  180
VRCAQAVSDD DIATAIGWMD NVLGKMVSVY GEPLQRLGAY LLEGLRARLE SSGSMIYKSL  240
KCEQPTSKEL MSYMHILYQI CPFWKFAYVA ANAVILEAMA TESMIHILDF QITQGTQWLL  300
LIQALAHRPG GPPSIRITAV DDSQSIHARG GGLEIVGQRL SDFARSCGVP LEFHIAAMCG  360
SQVERTNIVI RAGEALAVNF PYVLHHMQDE SVSTENHRDR LLRLVKSLSP KVVTLVEQES  420
NTNTSSFFNR FVEIMDYYTA MFESIDAGCP RDDRKRLNAE QHCVARDIVN MVACEGVERV  480
ERHELLGKWR MRFSMAGFRQ WPLSPSVVAA VRNMLKEFNG NYRVEQRDDA LYLGWMRRAM  540
VTSSAWC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-53	182	547	24	378	Protein SCARECROW
5b3h_D	2e-53	182	547	24	378	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269\|PubMed:16680434}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269\|PubMed:16680434}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025613312.1	0.0	scarecrow-like protein 13
Refseq	XP_025613322.1	0.0	scarecrow-like protein 13
Refseq	XP_025613332.1	0.0	scarecrow-like protein 13
Swissprot	Q9M0M5	0.0	SCL13_ARATH; Scarecrow-like protein 13
TrEMBL	A0A445EL97	0.0	A0A445EL97_ARAHY; Uncharacterized protein
STRING	GLYMA17G01150.1	0.0	(Glycine max)