PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy014383
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRF
Protein Properties Length: 382aa    MW: 41132.7 Da    PI: 8.5983
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59548542PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC82.24.6e-26128171144
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e
  Ahy014383 128 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVE 171
                79***************************************987 PP

2QLQ51.92.4e-185894137
        QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
               s+F+ +Q+q+L+ Q+l+++y++a++ vPpeLlq+i+k
  Ahy014383 58 SYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKK 94
               78*********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.4E-105894IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.6E-135992IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.5075994IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.808128172IPR014977WRC domain
PfamPF088792.2E-22129171IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MPKLLPPESH QQQPPSPASA LPLFVPEPNS KVTCTLSDST LAPHTTTTTT TKFPRMGSYF  60
SLSQWQELEL QALIFRYMLA GAAVPPELLQ PIKKSLFHSS PYFLHHSLQH YQPAALLQSG  120
YWGRASMDPE PGRCRRTDGK KWRCSRDVVA GQKYCERHMH RGRNRSRKPV ELPTPTTGGG  180
TTLGVVSSSS CISSPPLATA SLKSPFDLLH LNNERSSGSG GTKEEENKRV FENQDNHHHV  240
GGDGGRSGGH MLRHFFDDWP RSLHQDPENA ENNGGGGGSG RMNSATSLSI SMPGNNAASS  300
DVSLKLSTGY GEDPCPRNGN GNAEAEQLQL SWAGGWSSGN QVASMGGPLA EALRSSTSTS  360
SPTSVLHHLP RAAASQTSFI ST
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:22419826}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016208121.10.0growth-regulating factor 3
RefseqXP_025657913.10.0growth-regulating factor 3
SwissprotQ9SJR51e-93GRF3_ARATH; Growth-regulating factor 3
TrEMBLA0A444YPM00.0A0A444YPM0_ARAHY; Uncharacterized protein
STRINGXP_007162865.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.13e-74growth-regulating factor 4
Publications ? help Back to Top
  1. Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
    Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
    Plant Cell, 2013. 25(9): p. 3570-83
    [PMID:24076976]
  2. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  3. Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
    Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
    PLoS ONE, 2014. 9(5): p. e98477
    [PMID:24875638]
  4. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]