PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ahy014383 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | GRF | ||||||||
Protein Properties | Length: 382aa MW: 41132.7 Da PI: 8.5983 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 82.2 | 4.6e-26 | 128 | 171 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e Ahy014383 128 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVE 171 79***************************************987 PP | |||||||
2 | QLQ | 51.9 | 2.4e-18 | 58 | 94 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ +Q+q+L+ Q+l+++y++a++ vPpeLlq+i+k Ahy014383 58 SYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKK 94 78*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.4E-10 | 58 | 94 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.6E-13 | 59 | 92 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.507 | 59 | 94 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.808 | 128 | 172 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.2E-22 | 129 | 171 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MPKLLPPESH QQQPPSPASA LPLFVPEPNS KVTCTLSDST LAPHTTTTTT TKFPRMGSYF 60 SLSQWQELEL QALIFRYMLA GAAVPPELLQ PIKKSLFHSS PYFLHHSLQH YQPAALLQSG 120 YWGRASMDPE PGRCRRTDGK KWRCSRDVVA GQKYCERHMH RGRNRSRKPV ELPTPTTGGG 180 TTLGVVSSSS CISSPPLATA SLKSPFDLLH LNNERSSGSG GTKEEENKRV FENQDNHHHV 240 GGDGGRSGGH MLRHFFDDWP RSLHQDPENA ENNGGGGGSG RMNSATSLSI SMPGNNAASS 300 DVSLKLSTGY GEDPCPRNGN GNAEAEQLQL SWAGGWSSGN QVASMGGPLA EALRSSTSTS 360 SPTSVLHHLP RAAASQTSFI ST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:22419826}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016208121.1 | 0.0 | growth-regulating factor 3 | ||||
Refseq | XP_025657913.1 | 0.0 | growth-regulating factor 3 | ||||
Swissprot | Q9SJR5 | 1e-93 | GRF3_ARATH; Growth-regulating factor 3 | ||||
TrEMBL | A0A444YPM0 | 0.0 | A0A444YPM0_ARAHY; Uncharacterized protein | ||||
STRING | XP_007162865.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 3e-74 | growth-regulating factor 4 |
Publications ? help Back to Top | |||
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