PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ahy013497 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 244aa MW: 27604.3 Da PI: 9.9949 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.9 | 1.8e-05 | 49 | 69 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H Ahy013497 49 CEICGKGFQRDQNLQLHRRGH 69 *******************88 PP | |||||||
2 | zf-C2H2 | 13.4 | 0.00024 | 124 | 146 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Ahy013497 124 WKCDKCSKKYAVQSDWKAHSKTC 146 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 46 | 69 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.53E-8 | 46 | 69 | No hit | No description |
PROSITE profile | PS50157 | 11.489 | 47 | 69 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.076 | 47 | 69 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 49 | 69 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 85 | 89 | 119 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.2E-5 | 112 | 145 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.53E-8 | 119 | 144 | No hit | No description |
SMART | SM00355 | 150 | 124 | 144 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MSNFTPPPPT QTHGQVNKKK RSLPGNPDPD AEVIALSPKT LMATNRFLCE ICGKGFQRDQ 60 NLQLHRRGHN LPWKLKQRTK TEVVRKKVYV CPEPSCVHHD PGRALGDLTG IKKHFSRKHG 120 EKKWKCDKCS KKYAVQSDWK AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESA 180 RAVTAVSQSQ SHEIHGFSLK QEQQSSFSTM TPWLDFSSVT TTTTTPRLDL DEQVPNRNPN 240 PSGV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-36 | 120 | 181 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 2e-36 | 120 | 181 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 75 | 86 | KQRTKTEVVRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. | |||||
UniProt | Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016169850.1 | 0.0 | protein indeterminate-domain 11 | ||||
Refseq | XP_025670759.1 | 0.0 | protein indeterminate-domain 11 isoform X2 | ||||
Refseq | XP_029150864.1 | 0.0 | protein indeterminate-domain 11 isoform X1 | ||||
Swissprot | Q944L3 | 1e-109 | IDD9_ARATH; Zinc finger protein BALDIBIS | ||||
Swissprot | Q9ZWA6 | 1e-109 | IDD3_ARATH; Zinc finger protein MAGPIE | ||||
TrEMBL | A0A445BV15 | 1e-174 | A0A445BV15_ARAHY; Uncharacterized protein | ||||
STRING | XP_008338718.1 | 1e-119 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-101 | C2H2 family protein |
Publications ? help Back to Top | |||
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