PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy013374

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

GRAS

Protein Properties

Length: 746aa MW: 81781 Da PI: 6.7448

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59543107	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	269.1	1.4e-82	378	707	3	348
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 ++L++ Ae +++g+ laq +Larl+++ sp g+p+qR+a y++eAL+ ++ ++++ + s+ s + ++ a+k fse+sP+l+f+++t Nqa+ Ahy013374 378 DQLYKTAELIEAGNPVLAQGILARLNHQLSPIGKPFQRAALYMKEALQLLPHS---NISNLTAFSPIS---FIFKVGAYKSFSEISPVLQFANFTSNQAL 471 689******************************************998888...555544555555...99*********************** PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.... 198 eave+ +r+HiiDfdi+ G+QW +++q+La R++++ sl++T+++sp++ ++ el+ t+e+L+++A+ ++++fe n+l ++e+l+ ++ + + Ahy013374 472 IEAVERFDRIHIIDFDIGFGVQWSSFMQELALRNSNASSLKVTAIVSPSNCDEVELNFTRENLSQYAKDINLSFELNIL---NIESLSSPSFPLASqffd 568 **************************************************************************9...555555555544433455 PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 Ea+aVn+ l+ ++ + +s ++vL++vk+l+Pkvvv ++++d+ + ++ +++++ l+yysal++sl+a + + +k+E+++++++i+nv+ Ahy013374 569 SEAVAVNMPLSCFTHH------PSLVPSVLHFVKQLRPKVVVTLDRNCDRIDVPLPTKVVHVLQYYSALLESLDAV-NVNLDVLQKIEKHFIQPSIRNVI 661 ******999987......344458*****************************************665.3466999************ PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348 + + + +e+l +Wr+ + ++GF++ ++s+++++qa + + ++ g Ahy013374 662 TGHHHY--HSQEKLPHWRNLFVQSGFSSFTFSNFTEAQAXMSGAACA--G 707 977776..899**************************99888777..4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.332	350	715	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.9E-80	378	707	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 746 aa Download sequence Send to blast
MPFPSEEFQG KGVLDFSSSY CSATDLFSLL QHQQQLVNNH SIHQPPPPLT RRKVEEKGRR 60 RRRRREENKG YVGCTEPTSV LDSRRSQSPP SSSCTMSSSL GSSNNSTSKG SAAGGGGGGC 120 SASAAALTSE NPLPPPPEGS MEKCGGTRMM DDWEGQDQSI LRLIMGDVED PSAGLTKLLQ 180 TGSHNVDFSS GGFGVVDQGG LIMDPSVPGN YPAFPFLGAE NTDGHIAKTG GVAEPMFSSG 240 NNPMLASTSP AAGVFGSQQP VFGIVDEKPQ VINPQFMMNH NQVQFSENPS FFVPLTYPQM 300 QEQHVVYSQQ PAKRPLSDAA VGHNYQVPRL PLLDSGQEQF ARRQQQAQLP LFPHHSQQQK 360 VSSAGDEASN QLQQAMFDQL YKTAELIEAG NPVLAQGILA RLNHQLSPIG KPFQRAALYM 420 KEALQLLPHS NISNLTAFSP ISFIFKVGAY KSFSEISPVL QFANFTSNQA LIEAVERFDR 480 IHIIDFDIGF GVQWSSFMQE LALRNSNASS LKVTAIVSPS NCDEVELNFT RENLSQYAKD 540 INLSFELNIL NIESLSSPSF PLASQFFDSE AVAVNMPLSC FTHHPSLVPS VLHFVKQLRP 600 KVVVTLDRNC DRIDVPLPTK VVHVLQYYSA LLESLDAVNV NLDVLQKIEK HFIQPSIRNV 660 ITGHHHYHSQ EKLPHWRNLF VQSGFSSFTF SNFTEAQAXM SGAACAGARV SGREKPFVSC 720 SMLAAKRPGL HFELEMLNHA TTKALT

Sequence ? help Back to Top

Protein Sequence Length: 746 aa Download sequence Send to blast

MPFPSEEFQG KGVLDFSSSY CSATDLFSLL QHQQQLVNNH SIHQPPPPLT RRKVEEKGRR  60
RRRRREENKG YVGCTEPTSV LDSRRSQSPP SSSCTMSSSL GSSNNSTSKG SAAGGGGGGC  120
SASAAALTSE NPLPPPPEGS MEKCGGTRMM DDWEGQDQSI LRLIMGDVED PSAGLTKLLQ  180
TGSHNVDFSS GGFGVVDQGG LIMDPSVPGN YPAFPFLGAE NTDGHIAKTG GVAEPMFSSG  240
NNPMLASTSP AAGVFGSQQP VFGIVDEKPQ VINPQFMMNH NQVQFSENPS FFVPLTYPQM  300
QEQHVVYSQQ PAKRPLSDAA VGHNYQVPRL PLLDSGQEQF ARRQQQAQLP LFPHHSQQQK  360
VSSAGDEASN QLQQAMFDQL YKTAELIEAG NPVLAQGILA RLNHQLSPIG KPFQRAALYM  420
KEALQLLPHS NISNLTAFSP ISFIFKVGAY KSFSEISPVL QFANFTSNQA LIEAVERFDR  480
IHIIDFDIGF GVQWSSFMQE LALRNSNASS LKVTAIVSPS NCDEVELNFT RENLSQYAKD  540
INLSFELNIL NIESLSSPSF PLASQFFDSE AVAVNMPLSC FTHHPSLVPS VLHFVKQLRP  600
KVVVTLDRNC DRIDVPLPTK VVHVLQYYSA LLESLDAVNV NLDVLQKIEK HFIQPSIRNV  660
ITGHHHYHSQ EKLPHWRNLF VQSGFSSFTF SNFTEAQAXM SGAACAGARV SGREKPFVSC  720
SMLAAKRPGL HFELEMLNHA TTKALT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-24	382	700	25	344	Protein SCARECROW
5b3h_A	3e-24	382	700	24	343	Protein SCARECROW
5b3h_D	3e-24	382	700	24	343	Protein SCARECROW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	50	62	RRKVEEKGRRRRR
2	50	64	RRKVEEKGRRRRRRR
3	58	64	RRRRRRR
4	58	65	RRRRRRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015950601.1	0.0	scarecrow-like protein 27
TrEMBL	A0A445E9T6	0.0	A0A445E9T6_ARAHY; Uncharacterized protein
STRING	GLYMA01G33270.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	3e-79	GRAS family protein