PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy013280
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 316aa    MW: 33355.1 Da    PI: 6.0203
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59548544PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.5e-08256276526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C +far G+Ck G +C+F Hg
  Ahy013280 256 PCLYFAR-GYCKNGTSCRFLHG 276
                8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.422251278IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-4253277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5254276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5255276IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5256276IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDGYEATRIV FSRIQSMDPE NASKIMGLLL IQDHGEKEMI RLAFGPEALL HSVISKARKD  60
LGLPSNSPPT PSTPPSPSPF LSASTNPVNI SRQNSTSSSS RLGSGMNLPP ALTIPNPSSS  120
SASWAAMSDL QNPEDLMSPN NLVVGSSSTT SSSLPFYANG GSDPIDEYQL QDQLSFLNDG  180
SPNSTLAAAA CGGSHHNKSH DLFYPHSDMA SSPTGAGDPS LFPSYGWGGP LHRRSCSVND  240
ACLASEDPNS GFGWKPCLYF ARGYCKNGTS CRFLHGGGLG EADGAAAAAM VGSPSKIEMM  300
EQCHELLRSK TAQQQR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025687026.10.0zinc finger CCCH domain-containing protein 53 isoform X1
RefseqXP_025687027.10.0zinc finger CCCH domain-containing protein 53 isoform X2
RefseqXP_029151772.10.0zinc finger CCCH domain-containing protein 53 isoform X1
TrEMBLA0A445E2370.0A0A445E237_ARAHY; Uncharacterized protein
STRINGGLYMA12G01350.11e-147(Glycine max)