PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy013012
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family CPP
Protein Properties Length: 520aa    MW: 57064.5 Da    PI: 8.364
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S58446937PU_refUnigeneView CDS
PUT-171a-Arachis_hypogaea-2647PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.52e-16228266240
        TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                ++k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk 
  Ahy013012 228 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 266
                689**********************************96 PP
2TCR51.22.4e-16313351139
        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Ahy013012 313 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNA 351
                589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-18227268IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.685228353IPR005172CRC domain
PfamPF036386.5E-12230265IPR005172CRC domain
SMARTSM011144.4E-17313354IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.6E-12315351IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
PKRTQKLLRY LMNKQLDPSG RIIAIVNQVA SGSGHENEDH PPKPGLASDT QYTQENIANV  60
ALVASNPCEK MDDEHVYVIH RGIRRRCLDF EMASVRRNNS DGNSNASSNA TKSDERNTGG  120
DSRRCFLPGI GLHLNALATL KEHRGMKNEK SSSGRQLNIP SSSSSLSQEH HLLLLPASSE  180
RDMELPENEV QPVEDCSQSL SLMAGEEFNQ NSPKKKRRKV EIAGESESCK RCNCKKSKCL  240
KLYCECFAAG VYCIEPCSCQ DCFNKPIHED TVLQTRKQIE SRNPLAFAPK VIRSSDSVSE  300
IADDPNKTPA SARHKRGCNC KKSSCLKKYC ECYQGGVGCS ISCRCEGCKN AFGRKDGSAG  360
IDAEAEEETE ASEKGEVEKA LQKTEIQNIE ENQNSALQAT PLRLSRPLLP LPFSSKGKPP  420
RSFIATISGS ALIASQKLGK PNILRPQVKL EKPHQTVADD EMMDIIQGDS SPIACIKTSS  480
PNGKRISSPN CELGSSPTRR GGRKLILHSI PSFPSLTHHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-1823035012120Protein lin-54 homolog
5fd3_B7e-1823035012120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213217KKKRR
2213218KKKRRK
3214218KKRRK
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025620262.10.0protein tesmin/TSO1-like CXC 2
SwissprotF4JIF51e-136TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBLA0A445BFP90.0A0A445BFP9_ARAHY; Uncharacterized protein
STRINGXP_007143298.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-106TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]