PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy011930

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

GRAS

Protein Properties

Length: 774aa MW: 87447.5 Da PI: 6.253

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59548783	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	375.9	4.9e-115	399	771	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lL+ cA+avss+d++ a++lL+++++++s gd qRla++f++AL+arla+s+++ly +l+++++s ++ ++a+++f ++P+ k++ + aN+ Ahy011930 399 LRTLLVLCAQAVSSDDHSTATELLKQIRQHSSRLGDGSQRLAHCFANALEARLAGSGTQLYTSLTSKRKS---AADMVKAYQMFISACPFKKLAIIFANH 495 5789*******************************************************999998888...99********************* PP GRAS 101 aIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 +Il+ + + e++HiiDf+i +G+QWpaL+ L++Rp+gpp+lRiTg++ p++g +e+++etg+rLak++e+++vpfefn+ +a+++e++++e+L++ Ahy011930 496 TILNLPKPKevETLHIIDFGIRYGFQWPALIFRLSKRPGGPPKLRITGIELPQPGfrPAERVQETGRRLAKYCERFNVPFEFNA-IAQKWETIKIEDLKI 594 999887899*************************************9*************************.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 k++E laVn++++ ++llde+v l+s+rd+vLkl+++ +P++++++ + ++n++ F++rf eal +ys+lfd l++++ re+ r + E+e++gre+vn Ahy011930 595 KENELLAVNCMVRFKNLLDETVVLNSPRDAVLKLIRKANPNIFIHATVNGNYNAPFFVTRFREALFHYSTLFDVLDTNVDREDPMRLMFEEEFFGREVVN 694 ************************************************************************************************ PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++aceg+er+er et+++W+ r ++aG +++pl+++ + ++ l+ v+ ++++ + + +++gWk+r +++ S+W Ahy011930 695 IIACEGSERVERPETYKQWQVRNTRAGVRQLPLDDHLIHKLRCKLKDVYHGDFMLDVDGNYMLQGWKGRIIYASSCW 771 *********************************************666*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.969	373	752	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-112	399	771	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 774 aa Download sequence Send to blast
MDPNFNSSFL NGFRFRQVPT IPNVEEQCPD PVNGLETMNF GFMNDPFLLP PDQNNAQNPT 60 SSVSTITTAD EDSPLDDTDF SATVLRYINQ MLMEEDMEEK PCMFHDPLAL QAAEKSLYDA 120 IGGTYPHLPP HPLPPSIQHQ AQNYHNVESP DDSLSSNFSS YSSSLSTIST SNLVESHWSN 180 FDPSEYKPSI LQTSFPADFV FQASSNPGTQ SSTNNRNSFT TANNGGGLLG SSGAGFFDSS 240 FLSKSESMLQ FKRGMEEASK FLPKGNPLVI DLENSTFNPS FQKAPQHVDI KEERDEREYF 300 SGESKGRKNH EREDQVELQD GRSNKQSAIY REDSELSELF DKILLGTGCG KEAPPRCICD 360 EDKPNGQDKN VQQKEETNKF SSGKNRVKKQ GNKKGVVDLR TLLVLCAQAV SSDDHSTATE 420 LLKQIRQHSS RLGDGSQRLA HCFANALEAR LAGSGTQLYT SLTSKRKSAA DMVKAYQMFI 480 SACPFKKLAI IFANHTILNL PKPKEVETLH IIDFGIRYGF QWPALIFRLS KRPGGPPKLR 540 ITGIELPQPG FRPAERVQET GRRLAKYCER FNVPFEFNAI AQKWETIKIE DLKIKENELL 600 AVNCMVRFKN LLDETVVLNS PRDAVLKLIR KANPNIFIHA TVNGNYNAPF FVTRFREALF 660 HYSTLFDVLD TNVDREDPMR LMFEEEFFGR EVVNIIACEG SERVERPETY KQWQVRNTRA 720 GVRQLPLDDH LIHKLRCKLK DVYHGDFMLD VDGNYMLQGW KGRIIYASSC WVPA

Sequence ? help Back to Top

Protein Sequence Length: 774 aa Download sequence Send to blast

MDPNFNSSFL NGFRFRQVPT IPNVEEQCPD PVNGLETMNF GFMNDPFLLP PDQNNAQNPT  60
SSVSTITTAD EDSPLDDTDF SATVLRYINQ MLMEEDMEEK PCMFHDPLAL QAAEKSLYDA  120
IGGTYPHLPP HPLPPSIQHQ AQNYHNVESP DDSLSSNFSS YSSSLSTIST SNLVESHWSN  180
FDPSEYKPSI LQTSFPADFV FQASSNPGTQ SSTNNRNSFT TANNGGGLLG SSGAGFFDSS  240
FLSKSESMLQ FKRGMEEASK FLPKGNPLVI DLENSTFNPS FQKAPQHVDI KEERDEREYF  300
SGESKGRKNH EREDQVELQD GRSNKQSAIY REDSELSELF DKILLGTGCG KEAPPRCICD  360
EDKPNGQDKN VQQKEETNKF SSGKNRVKKQ GNKKGVVDLR TLLVLCAQAV SSDDHSTATE  420
LLKQIRQHSS RLGDGSQRLA HCFANALEAR LAGSGTQLYT SLTSKRKSAA DMVKAYQMFI  480
SACPFKKLAI IFANHTILNL PKPKEVETLH IIDFGIRYGF QWPALIFRLS KRPGGPPKLR  540
ITGIELPQPG FRPAERVQET GRRLAKYCER FNVPFEFNAI AQKWETIKIE DLKIKENELL  600
AVNCMVRFKN LLDETVVLNS PRDAVLKLIR KANPNIFIHA TVNGNYNAPF FVTRFREALF  660
HYSTLFDVLD TNVDREDPMR LMFEEEFFGR EVVNIIACEG SERVERPETY KQWQVRNTRA  720
GVRQLPLDDH LIHKLRCKLK DVYHGDFMLD VDGNYMLQGW KGRIIYASSC WVPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-45	406	773	26	380	Protein SCARECROW
5b3h_A	2e-45	406	773	25	379	Protein SCARECROW
5b3h_D	2e-45	406	773	25	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025641972.1	0.0	scarecrow-like protein 14 isoform X1
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A445A9G5	0.0	A0A445A9G5_ARAHY; Uncharacterized protein
STRING	XP_004505854.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]