PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ahy011866 | ||||||||
Common Name | MYB5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB | ||||||||
Protein Properties | Length: 182aa MW: 19525.6 Da PI: 6.6824 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.7e-17 | 54 | 99 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G ++W++Iar + gR++k+c++rw + Ahy011866 54 KGPWSPEEDTILSRLVSKFGARNWSLIARGIA-GRSGKSCRLRWCNQ 99 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 59.6 | 7.1e-19 | 106 | 150 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++v a++ +G++ W++Iar ++ gRt++ +k++w++ Ahy011866 106 RKPFTDEEDRIIVAAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 150 789*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.091 | 49 | 104 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.28E-31 | 51 | 147 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-15 | 53 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-16 | 54 | 99 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-26 | 55 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.31E-14 | 56 | 98 | No hit | No description |
SMART | SM00717 | 2.2E-17 | 105 | 153 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.171 | 105 | 155 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.1E-16 | 106 | 150 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.16E-13 | 108 | 151 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-24 | 108 | 154 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MDPPEETATT TLDHEGASTG ADAAADTGSG DEGPTEIAEA GGSGGGGSNR DRVKGPWSPE 60 EDTILSRLVS KFGARNWSLI ARGIAGRSGK SCRLRWCNQL DPAVKRKPFT DEEDRIIVAA 120 HAIHGNKWAA IARLLPGRTD NAIKNHWNST LRRRGVEHDK IKVESSNMVE DVSLDKAKAS 180 SE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-43 | 51 | 154 | 4 | 107 | B-MYB |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015950110.1 | 1e-129 | transcription factor MYB1 | ||||
Refseq | XP_025653117.1 | 1e-129 | transcription factor MYB1 | ||||
Swissprot | Q42575 | 5e-57 | MYB1_ARATH; Transcription factor MYB1 | ||||
TrEMBL | A0A445EB81 | 1e-127 | A0A445EB81_ARAHY; Uncharacterized protein | ||||
STRING | EMJ06514 | 4e-85 | (Prunus persica) |
Publications ? help Back to Top | |||
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