PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ahy011817 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 241aa MW: 27004.6 Da PI: 7.3018 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78.1 | 9.7e-25 | 129 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+ Ahy011817 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytQQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLL 224 99*****************************96555555..8************************************************..8899999* PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ Ahy011817 225 LGIRRA 230 ***997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.62E-46 | 114 | 240 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-42 | 122 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.57E-23 | 128 | 229 | No hit | No description |
PROSITE profile | PS50863 | 12.52 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.2E-23 | 129 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-24 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MKLSSSGFNQ PAEEEGEKKT LNSELWHACA GPLVSLPLVG SRVVYFPQGH SEQVAASTNR 60 EADVHIPNYP NLPPQLICQL HNVTMHADAE TDEVYAQMTL QPLNPQEQKD VYLLPAELGT 120 PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY TQQPPAQELI ARDLHDNEWK 180 FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTVMPSS 240 V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-116 | 13 | 241 | 42 | 270 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016166035.1 | 1e-173 | auxin response factor 6 isoform X1 | ||||
Refseq | XP_025666965.1 | 1e-173 | auxin response factor 6 isoform X1 | ||||
Swissprot | Q9ZTX8 | 1e-154 | ARFF_ARATH; Auxin response factor 6 | ||||
TrEMBL | A0A444YEP3 | 1e-173 | A0A444YEP3_ARAHY; Auxin response factor | ||||
STRING | GLYMA14G03650.1 | 1e-167 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 1e-156 | auxin response factor 6 |