PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy011756

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 484aa MW: 53417.7 Da PI: 9.3384

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59548993	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.4e-05	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Ahy011756 78 FVCEICNKGFQRDQNLQLHRRGH 100 89*******************88 PP
2	zf-C2H2	11.6	0.00086	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Ahy011756 154 WKCDKCSKIYAVQSDWKAHSKTC 176 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.38E-7	77	100	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.6E-5	77	100	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	7.7E-5	78	100	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	78	100	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	78	100	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2
SMART	SM00355	170	119	149	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.3E-4	142	175	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	7.38E-7	149	174	No hit	No description
SMART	SM00355	180	154	174	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MSNSTSLSEE ASVSSGTRIQ DFGATLNHVV STISPHQQQQ QQQPPQKIKK KRSLPGNPDP 60 DAEVIALSPK TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRN NKEVKKRAYV 120 CPEPSCVHHN PSRALGDLTG IKKHYCRKHG EKKWKCDKCS KIYAVQSDWK AHSKTCGTRE 180 YRCDCGTLFS RKDSFITHRA FCDALAEESA RVSANQHQLI TTPSNPLLQS LFLFPTQNNF 240 INPWDPQSSQ ENPNPNNNNN NTLLHNINIK PEVQSFHIPN SDNAPPLFLH QNPSKNNTIM 300 MTSPFRNNPH VRMQPQSNSA NAAAAATSAH LSATALLQKA ATVGAAAITG PNASLGVGQH 360 VTRHVTELGD MTQLDSVHFM NNMGVGGFNN NNNNTRSLKS SDDLTRDFLG LTGDNNGGRG 420 GGCDGGNAGA VDVSMNMKDM LTYTGNIDYQ QQHHHHLRHP LFKSPQQGFG FLGTTTAPES 480 WGNC

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MSNSTSLSEE ASVSSGTRIQ DFGATLNHVV STISPHQQQQ QQQPPQKIKK KRSLPGNPDP  60
DAEVIALSPK TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRN NKEVKKRAYV  120
CPEPSCVHHN PSRALGDLTG IKKHYCRKHG EKKWKCDKCS KIYAVQSDWK AHSKTCGTRE  180
YRCDCGTLFS RKDSFITHRA FCDALAEESA RVSANQHQLI TTPSNPLLQS LFLFPTQNNF  240
INPWDPQSSQ ENPNPNNNNN NTLLHNINIK PEVQSFHIPN SDNAPPLFLH QNPSKNNTIM  300
MTSPFRNNPH VRMQPQSNSA NAAAAATSAH LSATALLQKA ATVGAAAITG PNASLGVGQH  360
VTRHVTELGD MTQLDSVHFM NNMGVGGFNN NNNNTRSLKS SDDLTRDFLG LTGDNNGGRG  420
GGCDGGNAGA VDVSMNMKDM LTYTGNIDYQ QQHHHHLRHP LFKSPQQGFG FLGTTTAPES  480
WGNC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-35	150	214	3	67	Zinc finger protein JACKDAW
5b3h_F	2e-35	150	214	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016182885.1	0.0	protein indeterminate-domain 12
Refseq	XP_025632297.1	0.0	protein indeterminate-domain 12
Swissprot	O22759	1e-125	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A371FZ55	0.0	A0A371FZ55_MUCPR; Protein indeterminate-domain 12
STRING	GLYMA10G03541.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-112	indeterminate(ID)-domain 12

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]