PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy011485
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 435aa    MW: 47658.8 Da    PI: 8.3454
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59541495PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.9e-18323422198
                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++l +++
  Ahy011485 323 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGKLIMGF 420
                89**************************555567778***************9989999999***9.********************876.777777777 PP

                E- CS
         B3  97 fr 98 
                ++
  Ahy011485 421 RK 422
                65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-29315430IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-19320423IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-22321422No hitNo description
PfamPF023628.4E-16323422IPR003340B3 DNA binding domain
SMARTSM010192.7E-19323423IPR003340B3 DNA binding domain
PROSITE profilePS5086311.096323424IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MESRSCMNVV CATLTSIQWR KGWALRSGEF ADLCDKCGSA YEQSTFCEKF HSNDSGWREC  60
VSCGKRLHCG CIASKSQLEL LDSGGVSCIN CTRNSGHKLV AGTEKPTGSG ASKIKNVSEQ  120
LCPSLANQLN VRGMQVGHST DSDGLRWWLK PHNPDANVPF PEIKTEEGLP STAELGSQLI  180
SQFRCKSNGS SRVAKSDNCQ ADMEMQDIYE SLAHANLSMT LASPSGNPNP FHSAIADERE  240
QSKTSPPLLL GSRSRHLLPK PPRSSLGSSL ETNAAMVSQI RVARPPAEGR GRNQLLPRYW  300
PRITDQELQQ ISGDSNSTIV PLFEKMLSAS DAGRIGRLVL PKACAEAYFP PISQPEGLPL  360
RIQDVKGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRM DPEGKLIMGF  420
RKATNSAAVQ SQKGX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A5e-733014302131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016184089.10.0B3 domain-containing transcription repressor VAL2 isoform X2
RefseqXP_025633980.10.0B3 domain-containing transcription repressor VAL2 isoform X2
SwissprotQ5CCK41e-149VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLA0A445ALE90.0A0A445ALE9_ARAHY; Uncharacterized protein
STRINGGLYMA03G04330.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-151HSI2-like 1
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  3. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  4. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]