PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Ahy011152 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||||||
Family | GRAS | ||||||||||||
Protein Properties | Length: 522aa MW: 57311.3 Da PI: 5.6047 | ||||||||||||
Description | GRAS family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 326 | 7.5e-100 | 144 | 521 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 +++L+e+A a+++g++ a+++Larls+ ++p+g++ qRl +++ AL++r++ l + p+ e s e++ +++l +e s ++ +++++aN a Ahy011152 144 KQTLMEAASAIAEGKQDSATEILARLSQVSNPNGNSDQRLMDCMVSALKSRVNP----LENPPPVAEL---FSNEHAESTQLMFENSLCFMVGFMAANFA 236 589**************************************************9....4444444444...49999999********************* PP GRAS 102 Ileavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledleleeLr 195 Ilea+ ++ +r ++Dfdi++G Q+++Ll aL++R + pp ++Ri +v++ + g++e+l+++ge La+ Ae++++ fef+++ v++r+++l+ e+L Ahy011152 237 ILEAAFENktelKRFCVVDFDIGHGKQYVSLLLALSARGRTPPaMVRIVAVAD-TGGQEERLKSVGEMLARQAERFRIGFEFKIVqVTQRFSELTRESLG 335 ***865544778889***********************9666659********.667****************************7777*********** PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgr 292 ++ +E laVn++++l r++desvs+e++rde+L+ vkslsP+vv+++eqe++ n+++Fl+r++++++yy alfds+e++l++++ +er+kvE+ l+r Ahy011152 336 CDADEFLAVNFAFKLNRIPDESVSTENPRDELLRRVKSLSPRVVTIIEQEINANTAPFLARVADSCSYYGALFDSVESSLGKDNngnSERVKVEEG-LSR 434 *********************************************************************************9998999********.*** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk......sdgyrveeesgslvlgWkdrpLvsvSaW 373 +++n +aceg++r+er e ++kWr+r+++aGFk+ pls+++a+++k+ l++ + + g +v+ee+g +++gW++++L+++SaW Ahy011152 435 RVCNSLACEGRDRVERYEVFGKWRARVGMAGFKSKPLSQNVAESIKSRLAQSNncnsrvNSGLTVKEENGGICFGWMGKTLTVASAW 521 ***********************************************9987652101123578999********************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 45.581 | 117 | 496 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.6E-97 | 144 | 521 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 522 aa Download sequence Send to blast |
XHAFQTQRFG MPLFNQLRPN PIHSNSLPLP PPNSNNHFPY RCSNLSGSVS NRVQLPLPAE 60 PDNKINTMDH RLLELEKQLL EDEEEEAEAD AASVITTSAW SETIQNLMGN GSTPKPASSS 120 PTSSTTSSTS SSSSVASPAI GCWKQTLMEA ASAIAEGKQD SATEILARLS QVSNPNGNSD 180 QRLMDCMVSA LKSRVNPLEN PPPVAELFSN EHAESTQLMF ENSLCFMVGF MAANFAILEA 240 AFENKTELKR FCVVDFDIGH GKQYVSLLLA LSARGRTPPA MVRIVAVADT GGQEERLKSV 300 GEMLARQAER FRIGFEFKIV QVTQRFSELT RESLGCDADE FLAVNFAFKL NRIPDESVST 360 ENPRDELLRR VKSLSPRVVT IIEQEINANT APFLARVADS CSYYGALFDS VESSLGKDNN 420 GNSERVKVEE GLSRRVCNSL ACEGRDRVER YEVFGKWRAR VGMAGFKSKP LSQNVAESIK 480 SRLAQSNNCN SRVNSGLTVK EENGGICFGW MGKTLTVASA WL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-31 | 145 | 521 | 6 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016204305.1 | 0.0 | scarecrow-like protein 8 | ||||
Refseq | XP_025656904.1 | 0.0 | scarecrow-like protein 8 | ||||
Swissprot | Q9FYR7 | 1e-145 | SCL8_ARATH; Scarecrow-like protein 8 | ||||
TrEMBL | A0A444YXG0 | 0.0 | A0A444YXG0_ARAHY; Uncharacterized protein | ||||
STRING | XP_004512836.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-140 | SCARECROW-like 8 |