PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ahy011119 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NF-YC | ||||||||
Protein Properties | Length: 240aa MW: 27471.8 Da PI: 6.6773 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 164.9 | 1.1e-51 | 58 | 159 | 2 | 100 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 l++fw +q ie+a+df+ h+lPlarikki+kade+vkmisaeaP+++skace+fi+elt+r+w++aeenkrrtl+k+diaaavt+td+fdflvd+vpr Ahy011119 58 LHNFWDNQyreIEQAADFRIHSLPLARIKKIMKADENVKMISAEAPIIFSKACEMFIMELTMRAWNNAEENKRRTLQKNDIAAAVTKTDVFDFLVDVVPR 157 899****99999**************************************************************************************** PP NF-YC 99 de 100 de Ahy011119 158 DE 159 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.95E-31 | 44 | 151 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.1E-21 | 79 | 142 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.8E-37 | 80 | 157 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDKKESDQSA TRGTSTPSHT KVVAGPSVPS PLLRDHQHSH HYIHYHHLQQ EEEFHQKLHN 60 FWDNQYREIE QAADFRIHSL PLARIKKIMK ADENVKMISA EAPIIFSKAC EMFIMELTMR 120 AWNNAEENKR RTLQKNDIAA AVTKTDVFDF LVDVVPRDET VDLGLYAGIR RGGGNNNIVP 180 CYYYVPPQHV MGPPPYGPPR VPMVGRHVPN QDNINEQQNS ENTTHAMCPK EQNHSSDSDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-51 | 64 | 157 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 135 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025693833.1 | 0.0 | nuclear transcription factor Y subunit C-2-like | ||||
Refseq | XP_025693834.1 | 0.0 | nuclear transcription factor Y subunit C-2-like | ||||
Refseq | XP_025693841.1 | 0.0 | nuclear transcription factor Y subunit C-2-like | ||||
Refseq | XP_025693842.1 | 0.0 | nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q8LCG7 | 2e-56 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A445DJT4 | 0.0 | A0A445DJT4_ARAHY; Uncharacterized protein | ||||
STRING | XP_010094005.1 | 5e-63 | (Morus notabilis) |
Publications ? help Back to Top | |||
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