PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy010678

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

HB-other

Protein Properties

Length: 141aa MW: 15889.2 Da PI: 8.2579

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59522459	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.6	3.4e-21	39	94	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R++ k Ahy010678 39 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQVK 94 678899**********************************************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.4E-24	23	94	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.09E-20	24	96	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.811	36	96	IPR001356	Homeobox domain
SMART	SM00389	1.2E-18	37	100	IPR001356	Homeobox domain
Pfam	PF00046	8.7E-19	39	94	IPR001356	Homeobox domain
CDD	cd00086	4.94E-15	39	96	No hit	No description
PRINTS	PR00031	2.3E-5	67	76	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	71	94	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.3E-5	76	92	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
XSATKSGSEN LEVEGGGGSG GGGEGGSAGE DQNPRPNKKK RYHRHTQHQI QEMEAFFKEC 60 PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQVKTQTERS ENSQLRAENE KLRADNMRLD 120 PHSSNSTLLL DRGCNLNMPS P

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269\|PubMed:11846882}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015953298.2	2e-61	LOW QUALITY PROTEIN: homeobox-leucine zipper protein HDG2
Refseq	XP_016188415.1	2e-61	homeobox-leucine zipper protein HDG2
Refseq	XP_025643275.1	2e-61	homeobox-leucine zipper protein HDG2
Refseq	XP_025687365.1	2e-61	homeobox-leucine zipper protein HDG2
Swissprot	Q6ZAR0	1e-49	ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBL	A0A445A608	5e-60	A0A445A608_ARAHY; Uncharacterized protein
TrEMBL	A0A445E0W4	6e-60	A0A445E0W4_ARAHY; Uncharacterized protein
STRING	GLYMA12G32050.3	3e-57	(Glycine max)
STRING	GLYMA13G38430.1	3e-57	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05230.4	8e-46	homeodomain GLABROUS 2

Publications ? help Back to Top
Lee JH, et al. Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases. Plant Cell, 2008. 20(1): p. 152-67 [PMID:18223036] Yi J, et al. OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa. J. Exp. Bot., 2016. 67(8): p. 2425-37 [PMID:26912801] Dou M,Cheng S,Zhao B,Xuan Y,Shao M The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice. Int J Mol Sci, 2016. 17(3): p. 233 [PMID:26927068] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]