PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ahy010013 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 306aa MW: 34536.8 Da PI: 7.08 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.3 | 3.6e-50 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrF P+deelv +yL kk++++++ ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd++vl+ ++e+ Ahy010013 10 LPPGFRFYPSDEELVLHYLYKKITNEEVLK-GTLMEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDPlTREV 108 79************************9655.78***************88888999**************************************999999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg++ktLvfyk+rap+g kt W+mhe+rle Ahy010013 109 VGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 138 ***************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-60 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.856 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-27 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 306 aa Download sequence Send to blast |
MGLRDIGASL PPGFRFYPSD EELVLHYLYK KITNEEVLKG TLMEIDLHTC EPWQLPEVAK 60 LNANEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRTV LDPLTREVVG MRKTLVFYKN 120 RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKGKTD NSAKLSPQFM YEATPSSLTL 180 ASSSSSPPTN QTNCNNLHVI GYNQLPNFSS SSSPMAIHHN HHHHHHQNQN GSSSLMNLLQ 240 FSTKENSTIT QLSPKGGGGG GGGDDGGYGF MWDMDLEENS FHDGGVIASN LNDMRFEVDN 300 NTMVML |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-47 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-47 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-47 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-47 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-47 | 9 | 156 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-47 | 9 | 156 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016183051.1 | 0.0 | protein CUP-SHAPED COTYLEDON 3 | ||||
Refseq | XP_025632451.1 | 0.0 | protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | A0A445EG49 | 0.0 | A0A445EG49_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA13G18620.2 | 1e-162 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28530.1 | 8e-93 | NAC domain containing protein 74 |