PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy009956

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Dof

Protein Properties

Length: 284aa MW: 30201.4 Da PI: 8.0692

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59548222	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126	1.2e-39	44	103	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkk Ahy009956 44 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKI 103 6899*****************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-28	39	102	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-33	46	102	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.124	48	102	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	50	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
XQQPPASVVC TQISYSKEVE EAMEGISGNS SCTARPVLEK KARPQEQLNC PRCNSTNTKF 60 CYYNNYSLTQ PRYFCKTCRR YWTEGGSLRN VPVGGGSRKN KKIISSSASS SSSSLSSSSV 120 PKVPDLNPPQ NPNNKMMQGG GYDLNLAFPA MDNFHHHALS AYVEIPKLET GGGGGGGDGS 180 SSTAAAAVAA PSSLSAIELL RSSGMAAPYV HSSLMPNSNA LYPSGFPMQE IKPSLGFSLV 240 DGLGSNGGQV ENNDNGRLLF PFGEIKHHHH HQLSAAGVEL DQNN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016205769.1	1e-150	dof zinc finger protein DOF2.5 isoform X1
Refseq	XP_016205770.1	1e-150	dof zinc finger protein DOF2.5 isoform X1
Refseq	XP_016205771.1	1e-150	dof zinc finger protein DOF2.5 isoform X1
Refseq	XP_025662967.1	1e-150	dof zinc finger protein DOF2.5
Refseq	XP_025662968.1	1e-150	dof zinc finger protein DOF2.5
Swissprot	Q9ZPY0	1e-55	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	A0A444YLI3	1e-149	A0A444YLI3_ARAHY; Uncharacterized protein
STRING	GLYMA16G02550.2	1e-94	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	2e-54	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]