PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy009696

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Protein Properties

Length: 422aa MW: 48173.6 Da PI: 9.1975

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59548217	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.2	1.9e-15	8	96	3	98
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 k + +++ +s++l++p +f++++g + s t+ ++g W+v+l +k ++++++ +GW eFv+ + +g +vF+++g+s+f v++f+ Ahy009696 8 KLVL-PSTIQSRQLRIPDTFLNRYGAD--LSSIATFSVPDGSIWRVRL--KKLDNGFWFVDGWAEFVQRYSIGVGYLIVFRYEGKSTF--IVRIFN 96 4444.55566667*********977..7779***********..******************************998888..999985 PP
2	B3	55.8	8.6e-18	289	379	4	98
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 vl ps+ + ++++lp fae+h +++ + ++l+ ++gr+W v++ yr+++ l++GW eF+ +n+L egD++vF+l +e l v++fr Ahy009696 289 VLRPSYLYRGCIMYLPSCFAEKHlNEV--S-GFIKLQLSDGRQWPVRCLYRGGR--AKLSQGWFEFAIENNLGEGDVCVFELLPMKEVILQVTLFR 379 78899****************5333..3.369999999****665555..66*********************875566666777666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.6E-21	3	96	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.71E-22	3	96	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.72E-16	4	96	No hit	No description
PROSITE profile	PS50863	12.111	5	98	IPR003340	B3 DNA binding domain
SMART	SM01019	3.3E-13	6	98	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.9E-13	9	96	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.2E-23	278	379	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.61E-24	280	380	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.79E-22	284	379	No hit	No description
SMART	SM01019	6.6E-16	286	381	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.128	286	381	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-15	289	379	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MPRPSFHKLV LPSTIQSRQL RIPDTFLNRY GADLSSIATF SVPDGSIWRV RLKKLDNGFW 60 FVDGWAEFVQ RYSIGVGYLI VFRYEGKSTF IVRIFNLATS EISYQSPVRS SNEGAYFANR 120 LKIFEELEDE DSAEYSSPSG LTPGALQNKF TPEKNYTPPP LQNLFNGSKL NSVNWGDSAN 180 TLSSRSANSL DSQLTRDIGV QFNAIEFKRS TDELKLRTSV DEKEKKAPRK KRKSDGQEPS 240 EHQEEEAEMR FRFYESASAR KRTVTAEERE RAVNAAKAFE PLNPFCRVVL RPSYLYRGCI 300 MYLPSCFAEK HLNEVSGFIK LQLSDGRQWP VRCLYRGGRA KLSQGWFEFA IENNLGEGDV 360 CVFELLPMKE VILQVTLFRV TEDDGFFLPP PLPQPSQNLV SQSKMLNAHM HQRLGSGKLI 420 RN

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MPRPSFHKLV LPSTIQSRQL RIPDTFLNRY GADLSSIATF SVPDGSIWRV RLKKLDNGFW  60
FVDGWAEFVQ RYSIGVGYLI VFRYEGKSTF IVRIFNLATS EISYQSPVRS SNEGAYFANR  120
LKIFEELEDE DSAEYSSPSG LTPGALQNKF TPEKNYTPPP LQNLFNGSKL NSVNWGDSAN  180
TLSSRSANSL DSQLTRDIGV QFNAIEFKRS TDELKLRTSV DEKEKKAPRK KRKSDGQEPS  240
EHQEEEAEMR FRFYESASAR KRTVTAEERE RAVNAAKAFE PLNPFCRVVL RPSYLYRGCI  300
MYLPSCFAEK HLNEVSGFIK LQLSDGRQWP VRCLYRGGRA KLSQGWFEFA IENNLGEGDV  360
CVFELLPMKE VILQVTLFRV TEDDGFFLPP PLPQPSQNLV SQSKMLNAHM HQRLGSGKLI  420
RN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4i1k_A	9e-69	252	382	15	144	B3 domain-containing transcription factor VRN1
4i1k_B	9e-69	252	382	15	144	B3 domain-containing transcription factor VRN1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269\|PubMed:12114624}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016187086.1	0.0	B3 domain-containing transcription factor VRN1
Refseq	XP_025642218.1	0.0	B3 domain-containing transcription factor VRN1
Swissprot	Q8L3W1	1e-125	VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBL	A0A445A8W1	0.0	A0A445A8W1_ARAHY; Uncharacterized protein
STRING	XP_007131905.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	1e-70	related to vernalization1 1

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525] Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana. Plant Cell Rep., 2018. 37(6): p. 901-912 [PMID:29541883]