PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ahy009049 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 547aa MW: 62179.8 Da PI: 9.5139 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.1 | 4.8e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Ahy009049 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 33.8 | 7.9e-11 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Ahy009049 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 2.1E-13 | 10 | 70 | No hit | No description |
CDD | cd00167 | 3.31E-12 | 10 | 53 | No hit | No description |
SuperFamily | SSF46689 | 3.95E-21 | 33 | 106 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 1.11E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 4.0E-36 | 406 | 545 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 547 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TKGKKAKRKA REKQLEEARR 180 LASLQKKREL KAAGIDVRQR RRKRKGIDYN AEIPFEKRPP PGFYDIADED RPVEQPHFPT 240 TIEELEGKRR IDVETQLRKQ DIAKNKIAQR QDAPSAILHA NKLNDPETVR KQTKLMLPPP 300 QISDQELDEI ARMGYANDLA GSDEFGEGSA ATRALLANYA QTPGRGMTPL RTPQRSPASK 360 GDAVMMEAEN LARLRESQTP LLGGENPELH PSDFTGVTPK RKEVQTPNPM LTPSATPGVA 420 GLTPRIGMTP ARDGYASMTP KGTPLRDELR INEDLDMHER AKLELQRAEI RRSLRSGLGS 480 LPQPKNEYQI VMQPIPEDAE EPEEKIEEDM SDRIAREKAE EEARQQALLR KRSKVLQREL 540 PRPPAAS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 543 | 3 | 548 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 543 | 3 | 548 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 543 | 3 | 548 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 543 | 3 | 548 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 543 | 3 | 548 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 543 | 3 | 548 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 543 | 3 | 548 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 543 | 3 | 548 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 543 | 3 | 548 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 543 | 3 | 548 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 543 | 3 | 548 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 543 | 3 | 548 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 185 | 204 | KKRELKAAGIDVRQRRRKRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016183616.1 | 0.0 | cell division cycle 5-like protein isoform X1 | ||||
Refseq | XP_025633285.1 | 0.0 | cell division cycle 5-like protein isoform X1 | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A445AID6 | 0.0 | A0A445AID6_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA20G36600.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|