PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy008889

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

GRAS

Protein Properties

Length: 579aa MW: 64226.2 Da PI: 6.4104

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59555719	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	409.3	3.6e-125	217	578	1	365
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lL++cAea+++g+++ ++l+++ + +s +g+p+qRl ay++e+L ar s++++y+al+++e + ++ l+++++++e++P+lkf++++aN Ahy008889 217 LKQLLVACAEAMADGNMNDFDQLISKAKGAVSITGEPLQRLGAYMVEGLVARKEASGTGIYRALKCREPE---GKDLLSYMQMLFEICPYLKFGYMAANG 313 689****************************************************************9...9********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 aI ea e+++HiiDf+i qG+QW++LlqaLa+Rp+gpp++RiTg+++p s + e le +g+rLa + e++++p+ef+ v d++ ++L++++ Ahy008889 314 AIAEACRDEDHIHIIDFQIAQGTQWMTLLQALAARPRGPPHVRITGIDDPVSRyaRGEGLEVVGKRLAMMSEKFRIPVEFHG-VPVYAPDVTRDMLNIRS 412 **********************************************999999**********************.688999******* PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 gEalaVn+ lqlh++ desv+++++rd +L+lvkslsPkvv++veqe+++n+++F++rf+e+l+yy a+f+s++++lpr+s+eri+vE+++l+r+ivn+v Ahy008889 413 GEALAVNFPLQLHHTADESVDVNNPRDGILRLVKSLSPKVVTLVEQESNTNTTPFFNRFMETLDYYLAIFESIDVTLPRNSKERINVEQHCLARDIVNIV 512 ************************************************************************************************ PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365 aceg+er+erhe ++kW++rl++aGF++ pls+++++ ++ llr ++ + y++ e++g+++l Wk+r Ahy008889 513 ACEGKERVERHELFGKWKSRLTMAGFRQCPLSSYVNSVIRGLLRCYS-EHYSLVEKDGAMLLAWKNR 578 ***************************************9999.66*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.49	191	568	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-122	217	578	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence Send to blast
MDSQQLYSFG VTSAGLPYIP SFPAIPSSQP NRLLGSLKFD TGNSPNSPFS THFDSDTLSA 60 FSDSQDQQHS PGEILSGVST SCNSPFETNH YLHTSVSSAD SNRGSFQLYS ARSSLLQNAN 120 CNQKIRNVLL ELESALMAPD EEEVTTSNAS MVESSGPTTS GQRNRSWSHD HYGSQFVQSQ 180 GSYVTGSRQT SEFEHVMKRQ KSIVEASSPP GFPSGNLKQL LVACAEAMAD GNMNDFDQLI 240 SKAKGAVSIT GEPLQRLGAY MVEGLVARKE ASGTGIYRAL KCREPEGKDL LSYMQMLFEI 300 CPYLKFGYMA ANGAIAEACR DEDHIHIIDF QIAQGTQWMT LLQALAARPR GPPHVRITGI 360 DDPVSRYARG EGLEVVGKRL AMMSEKFRIP VEFHGVPVYA PDVTRDMLNI RSGEALAVNF 420 PLQLHHTADE SVDVNNPRDG ILRLVKSLSP KVVTLVEQES NTNTTPFFNR FMETLDYYLA 480 IFESIDVTLP RNSKERINVE QHCLARDIVN IVACEGKERV ERHELFGKWK SRLTMAGFRQ 540 CPLSSYVNSV IRGLLRCYSE HYSLVEKDGA MLLAWKNRX

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence Send to blast

MDSQQLYSFG VTSAGLPYIP SFPAIPSSQP NRLLGSLKFD TGNSPNSPFS THFDSDTLSA  60
FSDSQDQQHS PGEILSGVST SCNSPFETNH YLHTSVSSAD SNRGSFQLYS ARSSLLQNAN  120
CNQKIRNVLL ELESALMAPD EEEVTTSNAS MVESSGPTTS GQRNRSWSHD HYGSQFVQSQ  180
GSYVTGSRQT SEFEHVMKRQ KSIVEASSPP GFPSGNLKQL LVACAEAMAD GNMNDFDQLI  240
SKAKGAVSIT GEPLQRLGAY MVEGLVARKE ASGTGIYRAL KCREPEGKDL LSYMQMLFEI  300
CPYLKFGYMA ANGAIAEACR DEDHIHIIDF QIAQGTQWMT LLQALAARPR GPPHVRITGI  360
DDPVSRYARG EGLEVVGKRL AMMSEKFRIP VEFHGVPVYA PDVTRDMLNI RSGEALAVNF  420
PLQLHHTADE SVDVNNPRDG ILRLVKSLSP KVVTLVEQES NTNTTPFFNR FMETLDYYLA  480
IFESIDVTLP RNSKERINVE QHCLARDIVN IVACEGKERV ERHELFGKWK SRLTMAGFRQ  540
CPLSSYVNSV IRGLLRCYSE HYSLVEKDGA MLLAWKNRX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-59	224	577	26	369	Protein SCARECROW
5b3h_A	5e-59	224	577	25	368	Protein SCARECROW
5b3h_D	5e-59	224	577	25	368	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016170748.1	0.0	chitin-inducible gibberellin-responsive protein 1
Refseq	XP_025674014.1	0.0	chitin-inducible gibberellin-responsive protein 1
Swissprot	Q69VG1	0.0	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A444Y5A7	0.0	A0A444Y5A7_ARAHY; Uncharacterized protein
STRING	XP_004487630.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50600.1	1e-167	scarecrow-like 5

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]