PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy008858

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 234aa MW: 25195.2 Da PI: 8.2233

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59540862	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.7	4.1e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrrkC+++Cv+apyfp ++p++fa+vhk+FGasnv kll++l+ +r+da++sl+yeAear+rdPvyG+vg+i+ lq++l+q ++el +k+e Ahy008858 7 PCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHRLRQIQVELTNAKKE 106 7*********************************************************************************************999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.634	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-43	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DNPQRFAYVH KVFGASNVAK LLNELNAAQR 60 DDAVKSLAYE AEARLRDPVY GCVGLISVLQ HRLRQIQVEL TNAKKELATY IGPQALQGVP 120 TTAILQHHHS FASQMFPYNG AMAAPPAIAH GGQLMIRDAQ TAPPTPQQQI LEAQQLAAAV 180 VVRDQQDMFR GYDQHHQQQE FLRFNGGGFD MGSVSSGGGG YSQVSGGGGG GGGX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-49	4	121	8	124	LOB family transfactor Ramosa2.1
5ly0_B	4e-49	4	121	8	124	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020978631.1	1e-169	LOB domain-containing protein 36-like
Refseq	XP_025652771.1	1e-169	LOB domain-containing protein 36
Swissprot	Q9FKZ3	9e-74	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A444ZA36	1e-168	A0A444ZA36_ARAHY; Uncharacterized protein
STRING	GLYMA11G06210.3	1e-109	(Glycine max)

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]