PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy008296
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 323aa    MW: 35665 Da    PI: 8.1488
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59551098PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.2e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
        Ahy008296 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLSRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding48.91.5e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++ ++++  +lG++ W++Ia++++  Rt++++k++w+++l
        Ahy008296  67 RGNFTEQEEKMIIHLQDLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-25564IPR009057Homeodomain-like
PROSITE profilePS5129425.784965IPR017930Myb domain
SuperFamilySSF466892.34E-3111108IPR009057Homeodomain-like
SMARTSM007174.0E-151363IPR001005SANT/Myb domain
PfamPF002492.0E-161461IPR001005SANT/Myb domain
CDDcd001671.76E-111661No hitNo description
Gene3DG3DSA:1.10.10.608.1E-2565117IPR009057Homeodomain-like
SMARTSM007172.9E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129420.3666116IPR017930Myb domain
PfamPF002499.4E-1567112IPR001005SANT/Myb domain
CDDcd001671.93E-1069111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGRPPCCDKE GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLSRCS KSCRLRWTNY  60
LRPGIKRGNF TEQEEKMIIH LQDLLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKLQ  120
APSSGVCNFG GTGTGTGIGP GTNYSGSIPV RGQWERRLQT DIHMAKRALS EALSPENNNN  180
NSNNNNFCSQ KXIAQSSSLC YASSAENIAR LLKGWMKNPA TTGTNNKCSR TNSSSLTTQN  240
NNFFVVNGGD TASKGCSSND NSVELSETFE SLFGLESLDY SSNATTTTTT TTTTTSDHDH  300
DQFSHQSLSP NDENNVFQEN ESK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261411627128MYB TRANSFORMING PROTEIN
1mse_C2e-26141164105C-Myb DNA-Binding Domain
1msf_C2e-26141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025696654.10.0myb-related protein 306
SwissprotP813921e-103MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A445DBT00.0A0A445DBT0_ARAHY; Uncharacterized protein
STRINGGLYMA18G49360.11e-125(Glycine max)
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]