PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ahy007582 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | C2H2 | ||||||||
Protein Properties | Length: 218aa MW: 24297.7 Da PI: 10.7517 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.9 | 4e-06 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Ahy007582 83 FVCEVCNKGFQREQNLQLHRRGH 105 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.3E-6 | 82 | 105 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.43E-5 | 82 | 105 | No hit | No description |
PROSITE profile | PS50157 | 11.094 | 83 | 105 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 1.1E-5 | 83 | 105 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0041 | 83 | 105 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 230 | 125 | 155 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.43E-5 | 155 | 175 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MAATSSSSTP FFQIRQENHH ENLISQQQQQ LLQSSSTTTS APPPPPPPPL PQKKRRNHAA 60 GTPYPGAEVI ALSPKTLMAT NRFVCEVCNK GFQREQNLQL HRRGHNLPWK LKQKNPNKEP 120 KRKVYLCPEP TCVHHHPSRA LGDLTGIKKH FSRKHGEKKW KCHKCSKKYA VQSDWKAPPR 180 PAVPKSIGAT AAPSSPGVTV SSLTESFCDA LAHRKCIX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016181115.1 | 1e-104 | protein indeterminate-domain 5, chloroplastic isoform X1 | ||||
Refseq | XP_020968622.1 | 1e-104 | protein indeterminate-domain 5, chloroplastic isoform X1 | ||||
Refseq | XP_025681962.1 | 1e-104 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_025681963.1 | 1e-104 | protein indeterminate-domain 5, chloroplastic | ||||
Swissprot | Q8GYC1 | 2e-74 | IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic | ||||
TrEMBL | A0A396JPT4 | 3e-88 | A0A396JPT4_MEDTR; Putative transcription factor C2H2 family | ||||
STRING | GLYMA07G19470.2 | 4e-85 | (Glycine max) | ||||
STRING | XP_007153117.1 | 3e-85 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02080.1 | 5e-64 | indeterminate(ID)-domain 4 |
Publications ? help Back to Top | |||
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