PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Ahy006118 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | GATA | ||||||||||||
Protein Properties | Length: 159aa MW: 17980.7 Da PI: 8.7191 | ||||||||||||
Description | GATA family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 29.2 | 1.3e-09 | 19 | 38 | 1 | 20 |
GATA 1 CsnCgttkTplWRrgpdgnk 20 Cs C+ttkTplWR gp g+k Ahy006118 19 CSDCKTTKTPLWRGGPAGPK 38 ******************98 PP | |||||||
2 | GATA | 22.5 | 1.6e-07 | 68 | 81 | 21 | 34 |
GATA 21 tLCnaCGlyyrkkg 34 +LCnaCG++yrk++ Ahy006118 68 SLCNACGIRYRKRR 81 5***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 9.13 | 13 | 36 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.1E-5 | 13 | 92 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.08E-5 | 16 | 37 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.0E-7 | 17 | 38 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 3.0E-7 | 19 | 38 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.75E-8 | 19 | 99 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.7E-4 | 67 | 97 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MDLNKEWVCE ELSESKKCCS DCKTTKTPLW RGGPAGPKVI PSNFNFFFFI GCVMQNIXFL 60 LFVFLDQSLC NACGIRYRKR RASAVGMRKG QERKRERSQN GGSSSSSDNE LKESLKVNLM 120 ALGEEFWLLK KKQRSMCLLG EEEQAAVCLM ALSCGYVFA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015968671.1 | 5e-78 | GATA transcription factor 16 | ||||
Refseq | XP_025603745.1 | 5e-78 | GATA transcription factor 16 | ||||
TrEMBL | A0A445CNB1 | 1e-76 | A0A445CNB1_ARAHY; Uncharacterized protein | ||||
STRING | VIT_14s0060g01520.t01 | 1e-38 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 3e-13 | GATA transcription factor 15 |