PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Ahy005581 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||||||
Family | B3 | ||||||||||||
Protein Properties | Length: 183aa MW: 20565.2 Da PI: 4.8707 | ||||||||||||
Description | B3 family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.7 | 1.3e-10 | 18 | 100 | 8 | 97 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++v g+l lp kf +++g +++ + l+ ++g W++ + ++g + +++GW+eF++ L+ g ++F ++++s+ +v+++ Ahy005581 18 KSVED-GNLKLPEKFSKKYGDGVPNP--VYLKPPDGTAWKIDW--SLYDGVIQFENGWNEFASYYALDNGNLLMFVYNETSN--IKVHIL 100 55555.55***********5554565..***************..99999999***********************976444..477776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.3E-17 | 5 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.68E-8 | 10 | 101 | No hit | No description |
PROSITE profile | PS50863 | 10.884 | 10 | 103 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-15 | 10 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.6E-7 | 11 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.9E-8 | 17 | 100 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 183 aa Download sequence Send to blast |
MASSISSDIR FFKIGLGKSV EDGNLKLPEK FSKKYGDGVP NPVYLKPPDG TAWKIDWSLY 60 DGVIQFENGW NEFASYYALD NGNLLMFVYN ETSNIKVHIL DIIYGLEINY PSLDHIGDDN 120 SIEILNELPP RGWPRKRLKA APEVSSPSTS KILRSSVKTG DVEKGPDKQN WMQCCNNEEA 180 SQS |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025624622.1 | 1e-133 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A444X9W7 | 2e-99 | A0A444X9W7_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A444XA76 | 4e-95 | A0A444XA76_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445B1P9 | 3e-96 | A0A445B1P9_ARAHY; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 9e-16 | B3 family protein |