PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ahy005428 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | TCP | ||||||||
Protein Properties | Length: 190aa MW: 21041 Da PI: 10.0391 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 92.4 | 9.6e-29 | 47 | 120 | 3 | 74 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLlq+ k i++ + ++ ++ + Ahy005428 47 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLGQPSKVIDWLLQATKLDIDKPPPLQIPPGFAQfhH 120 78*************************************************************77766333322 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.745 | 48 | 106 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 9.5E-26 | 48 | 110 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MSSSKSSYQA KQEDDGGGGG GGGGTSSSRQ WTAFRNPRIV RVSRSLGGKD RHSKVCTIRG 60 LRDRRIRLSV PTAIQLYDLQ DRLGLGQPSK VIDWLLQATK LDIDKPPPLQ IPPGFAQFHH 120 QQTLIPLSHH HQFSLGGFYD ANSSRFWDMD SSSISLKGKE SDTITHPAGV ISEKGKWIXT 180 NQHVDENQDX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-17 | 53 | 107 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-17 | 53 | 107 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015943543.1 | 1e-136 | transcription factor TCP5 | ||||
Refseq | XP_015943551.1 | 1e-136 | transcription factor TCP5 | ||||
Refseq | XP_015943558.1 | 1e-136 | transcription factor TCP5 | ||||
Refseq | XP_015949865.1 | 1e-136 | transcription factor TCP5-like | ||||
Refseq | XP_025617176.1 | 1e-136 | transcription factor TCP5 | ||||
Refseq | XP_025617182.1 | 1e-136 | transcription factor TCP5 | ||||
Swissprot | Q9FME3 | 1e-47 | TCP5_ARATH; Transcription factor TCP5 | ||||
TrEMBL | A0A445EJQ5 | 1e-134 | A0A445EJQ5_ARAHY; Uncharacterized protein | ||||
STRING | XP_004516160.1 | 5e-70 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 3e-50 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Publications ? help Back to Top | |||
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