PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy003670

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 322aa MW: 36201.3 Da PI: 9.9804

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-171a-Arachis_hypogaea-26807	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Ahy003670 66 FVCEICKKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	10.7	0.0016	144	165	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C+k + +s+ k H + + Ahy003670 144 KCEKCSKKYAVHSDWKAHTKIC 165 8*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.11E-7	65	88	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.8E-5	65	88	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.039	66	88	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.637	66	88	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	68	88	IPR007087	Zinc finger, C2H2
SMART	SM00355	74	108	138	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	6.11E-7	138	163	No hit	No description
SMART	SM00355	150	143	163	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MMMSSSEAFS SSPSAAAPSS SSIIHYGNPN SIPGVAKRKR SQPGRPDPEA EVIALSPKSL 60 MATNRFVCEI CKKGFQRDQN LQLHRRGHNL PWKLRQREKE EVVRKKVYVC PEKSCVHRES 120 SRALGDLTGI KKHYSRKHGE KKLKCEKCSK KYAVHSDWKA HTKICGTREY RCHCGTLFSR 180 KDSFLTHRSF CQALPQFHTA SMPPPSLPLW LDQTINQENK VGDLLYSSSS STLMSATALL 240 QKATQMESTP MASNNDNAFV GFMLSSSSQF SSFNNDSNLM QHPLGLTRDF LGVGVTTKFM 300 TNPMGSLLDF QTNPLHHHQE YM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-29	139	196	3	60	Zinc finger protein JACKDAW
5b3h_F	6e-29	139	196	3	60	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	105	RQREKEEVVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025614028.1	0.0	zinc finger protein BALDIBIS isoform X1
Refseq	XP_025614029.1	0.0	zinc finger protein BALDIBIS isoform X1
Refseq	XP_025614030.1	0.0	zinc finger protein BALDIBIS isoform X1
Swissprot	O22759	9e-99	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A445BW23	0.0	A0A445BW23_ARAHY; Uncharacterized protein
STRING	XP_009789501.1	1e-103	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	7e-82	C2H2-like zinc finger protein

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]